Merge pull request #165 from nf-core/update_modules

update wfmash, multiqc
nf-core · Feb 8, 2024 · c8cad90 · c8cad90
2 parents 1d2915b + 6914080
commit c8cad90
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Showing 11 changed files with 135 additions and 22 deletions.
diff --git a/modules.json b/modules.json
@@ -17,7 +17,7 @@
                     },
                     "multiqc": {
                         "branch": "master",
-                        "git_sha": "8ec825f465b9c17f9d83000022995b4f7de6fe93",
+                        "git_sha": "9e71d8519dfbfc328c078bba14d4bd4c99e39a94",
                         "installed_by": ["modules"]
                     },
                     "odgi/build": {
@@ -87,7 +87,7 @@
                     },
                     "wfmash": {
                         "branch": "master",
-                        "git_sha": "96fadda088c6e79777ba8eef939e36bb03a69c65",
+                        "git_sha": "0c49f318ec4701b891a87f25fb07b34713c90203",
                         "installed_by": ["modules"]
                     }
                 }

diff --git a/modules/local/split_approx_mappings_in_chunks/main.nf b/modules/local/split_approx_mappings_in_chunks/main.nf
@@ -2,10 +2,10 @@ process SPLIT_APPROX_MAPPINGS_IN_CHUNKS {
     tag "$meta.id"
     label 'process_single'
 
-    conda "bioconda::pggb=0.5.4"
+    conda "bioconda::wfmash=0.12.6"
     container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ?
-        'https://depot.galaxyproject.org/singularity/pggb:0.5.4--hdfd78af_0':
-        'biocontainers/pggb:0.5.4--hdfd78af_0' }"
+        'https://depot.galaxyproject.org/singularity/wfmash:0.12.6--h11f254b_1':
+        'biocontainers/wfmash:0.12.6--h11f254b_1' }"
 
     input:
     tuple val(meta), path(paf)

diff --git a/modules/nf-core/multiqc/tests/main.nf.test b/modules/nf-core/multiqc/tests/main.nf.test
diff --git a/modules/nf-core/multiqc/tests/main.nf.test.snap b/modules/nf-core/multiqc/tests/main.nf.test.snap
diff --git a/modules/nf-core/wfmash/environment.yml b/modules/nf-core/wfmash/environment.yml
diff --git a/modules/nf-core/wfmash/main.nf b/modules/nf-core/wfmash/main.nf
diff --git a/modules/nf-core/wfmash/meta.yml b/modules/nf-core/wfmash/meta.yml
diff --git a/modules/nf-core/wfmash/tests/main.nf.test b/modules/nf-core/wfmash/tests/main.nf.test
diff --git a/modules/nf-core/wfmash/tests/main.nf.test.snap b/modules/nf-core/wfmash/tests/main.nf.test.snap
diff --git a/modules/nf-core/wfmash/tests/nextflow.config b/modules/nf-core/wfmash/tests/nextflow.config
diff --git a/modules/nf-core/wfmash/tests/tags.yml b/modules/nf-core/wfmash/tests/tags.yml