Skip to content
Back to pull request #202

add bioRxiv DOI #598

Sign in to view logs

add bioRxiv DOI

add bioRxiv DOI #598

Triggered via pull request July 4, 2024 12:54
@subwaystationsubwaystation
opened #202
bioRxiv
Status Success
Total duration 6m 59s
Artifacts –

ci.yml

on: pull_request
Matrix: Run pipeline with community parameters
Matrix: Run pipeline with metric parameter suffixes
Matrix: Run pipeline with smoothxg parameters
Matrix: Run pipeline with test data
Matrix: Run pipeline with vg deconstruct parameters
Matrix: Run pipeline with wfmash_chunks parameters
Matrix: Run pipeline with wfmash_only parameters
Matrix: Run pipeline with wfmash_sparse_map parameters
Fit to window
Zoom out
Zoom in

Annotations

13 warnings
Run pipeline with wfmash_only parameters (--wfmash_only)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with wfmash_sparse_map parameters (--wfmash_sparse_map auto)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with smoothxg parameters (--smoothxg_poa_params asm10)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with wfmash_sparse_map parameters (--wfmash_sparse_map 0.5)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with metric parameter suffixes (--wfmash_sequence_length 8k --wfmash_block_length 38...
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with smoothxg parameters (--smoothxg_write_maf --smoothxg_poa_length 100,200,300 --s...
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with wfmash_chunks parameters (--wfmash_chunks 2)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with community parameters (--communities)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with community parameters (--communities --wfmash_chunks 2)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with vg deconstruct parameters (--vcf_spec "gi|568815561:5,gi|568815567:25")
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with community parameters (--communities --vcf_spec "gi|568815561:5,gi|568815567:25")
The following actions uses Node.js version which is deprecated and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with test data (23.04.0)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run pipeline with test data (latest-everything)
The following actions uses Node.js version which is deprecated and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/