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Some fixes before the upcoming release #257

Merged
merged 21 commits into from
Apr 30, 2024
Merged

Some fixes before the upcoming release #257

merged 21 commits into from
Apr 30, 2024

Commits on Mar 27, 2024

  1. added maxquant profile to nextflow.config, clarified some docu, made … 

    …obs_name_col optional in report.rmd
    @WackerO
    WackerO committed Mar 27, 2024
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  2. prettier

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    WackerO committed Mar 27, 2024
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  3. Bugfix in proteus_measurecol_prefix parameter with final whitespace

    @WackerO
    WackerO committed Mar 27, 2024
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  4. prettier

    @WackerO
    WackerO committed Mar 27, 2024
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  5. Readded the projectDir to hopefully get rid of the download error

    @WackerO
    WackerO committed Mar 27, 2024
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  6. linting

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    WackerO committed Mar 27, 2024
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  7. more linting; fails locally despite same paths as in airrflow, but ma… 

    …ybe it works online?
    @WackerO
    WackerO committed Mar 27, 2024
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  8. Added file params with defaults to linting ignore list as they are not 

    properly linted (see
https://nfcore.slack.com/archives/CE5LG7WMB/p1706797483231359)
    @WackerO
    WackerO committed Mar 27, 2024
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  9. checked out dev logos as the nf-core lint --fix files_unchanged comma… 

    …nd messed them up
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    WackerO committed Mar 27, 2024
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  10. prettier

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    WackerO committed Mar 27, 2024
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Commits on Apr 8, 2024

  1. Update docs/usage.md 

    Co-authored-by: Jonathan Manning <jonathan.manning@seqera.io>
    @WackerO @pinin4fjords
    WackerO and pinin4fjords committed Apr 8, 2024
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  2. Update docs/usage.md 

    Co-authored-by: Jonathan Manning <jonathan.manning@seqera.io>
    @WackerO @pinin4fjords
    WackerO and pinin4fjords committed Apr 8, 2024
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  3. Update docs/usage.md 

    Co-authored-by: Jonathan Manning <jonathan.manning@seqera.io>
    @WackerO @pinin4fjords
    WackerO and pinin4fjords committed Apr 8, 2024
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Commits on Apr 12, 2024

  1. updated proteus module

    @WackerO
    WackerO committed Apr 12, 2024
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  2. Merge branch 'prerelease_fixes' of https://github.com/WackerO/differe… 

    …ntialabundance into prerelease_fixes
    @WackerO
    WackerO committed Apr 12, 2024
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Commits on Apr 19, 2024

  1. Fixed filter_difftable module not properly filtering (had to switch t… 

    …o python); undid the changes to the docs/defaults for --proteus_measurecol_prefix regarding the final space
    @WackerO
    WackerO committed Apr 19, 2024
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  2. Merge branch 'dev' of https://github.com/nf-core/differentialabundance … 

    …into prerelease_fixes
    @WackerO
    WackerO committed Apr 19, 2024
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  3. Updated changelog

    @WackerO
    WackerO committed Apr 19, 2024
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Commits on Apr 22, 2024

  1. linting

    @WackerO
    WackerO committed Apr 22, 2024
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  2. moved log2 from workflow into filter module

    @WackerO
    WackerO committed Apr 22, 2024
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Commits on Apr 24, 2024

  1. Merge branch 'dev' of https://github.com/nf-core/differentialabundance … 

    …into prerelease_fixes
    @WackerO
    WackerO committed Apr 24, 2024
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