Skip to content

Commit

Permalink
Merge pull request #314 from JoseEspinosa/restructure
Browse files Browse the repository at this point in the history
Update modules to lastest restructuring on nf-core/modules
  • Loading branch information
JoseEspinosa committed Oct 6, 2022
2 parents fd95002 + c417d09 commit 70f847c
Show file tree
Hide file tree
Showing 79 changed files with 395 additions and 311 deletions.
4 changes: 4 additions & 0 deletions CHANGELOG.md
Original file line number Diff line number Diff line change
Expand Up @@ -3,6 +3,10 @@
The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/)
and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).

## [Unpublished Version / DEV]

### Enhancements & fixes

## [[2.0.0](https://github.com/nf-core/chipseq/releases/tag/2.0.0)] - 2022-10-03

### Enhancements & fixes
Expand Down
260 changes: 131 additions & 129 deletions modules.json
Original file line number Diff line number Diff line change
Expand Up @@ -2,136 +2,138 @@
"name": "nf-core/chipseq",
"homePage": "https://github.com/nf-core/chipseq",
"repos": {
"nf-core/modules": {
"git_url": "https://github.com/nf-core/modules.git",
"https://github.com/nf-core/modules.git": {
"modules": {
"bowtie2/align": {
"branch": "master",
"git_sha": "848ee9a215d02d80be033bfa60881700f2bd914c"
},
"bowtie2/build": {
"branch": "master",
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"bwa/index": {
"branch": "master",
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"bwa/mem": {
"branch": "master",
"git_sha": "4f5274c3de0c9521f5033893ff61057a74c45ba9"
},
"chromap/chromap": {
"branch": "master",
"git_sha": "897c33d5da084b61109500ee44c01da2d3e4e773"
},
"chromap/index": {
"branch": "master",
"git_sha": "dbb46c9b635080b132bab4b8d5b9a14f0d1c22e7"
},
"custom/dumpsoftwareversions": {
"branch": "master",
"git_sha": "e5b44499efcf6f7fb24874886bac60591c5d94dd"
},
"custom/getchromsizes": {
"branch": "master",
"git_sha": "213403187932dbbdd936a04474cc8cd8abae7a08"
},
"deeptools/computematrix": {
"branch": "master",
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"deeptools/plotfingerprint": {
"branch": "master",
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"deeptools/plotheatmap": {
"branch": "master",
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"deeptools/plotprofile": {
"branch": "master",
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"fastqc": {
"branch": "master",
"git_sha": "49b18b1639f4f7104187058866a8fab33332bdfe"
},
"gffread": {
"branch": "master",
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"gunzip": {
"branch": "master",
"git_sha": "fa37e0662690c4ec4260dae282fbce08777503e6"
},
"homer/annotatepeaks": {
"branch": "master",
"git_sha": "233fa70811a03a4cecb2ece483b5c8396e2cee1d"
},
"khmer/uniquekmers": {
"branch": "master",
"git_sha": "82fdff4fb4ce6cafcc028a7503da835427f35352"
},
"macs2/callpeak": {
"branch": "master",
"git_sha": "f0800157544a82ae222931764483331a81812012"
},
"phantompeakqualtools": {
"branch": "master",
"git_sha": "233fa70811a03a4cecb2ece483b5c8396e2cee1d"
},
"picard/collectmultiplemetrics": {
"branch": "master",
"git_sha": "682f789f93070bd047868300dd018faf3d434e7c"
},
"picard/markduplicates": {
"branch": "master",
"git_sha": "682f789f93070bd047868300dd018faf3d434e7c"
},
"picard/mergesamfiles": {
"branch": "master",
"git_sha": "682f789f93070bd047868300dd018faf3d434e7c"
},
"preseq/lcextrap": {
"branch": "master",
"git_sha": "7111e571cc5b6069de4673cd6165af680f17b4d7"
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "ecece498f10b47b7c9d06f53a310cea5811b4c5f"
},
"samtools/idxstats": {
"branch": "master",
"git_sha": "ecece498f10b47b7c9d06f53a310cea5811b4c5f"
},
"samtools/index": {
"branch": "master",
"git_sha": "897c33d5da084b61109500ee44c01da2d3e4e773"
},
"samtools/sort": {
"branch": "master",
"git_sha": "897c33d5da084b61109500ee44c01da2d3e4e773"
},
"samtools/stats": {
"branch": "master",
"git_sha": "f48a24770e24358e58de66e9b805a70d77cd154b"
},
"subread/featurecounts": {
"branch": "master",
"git_sha": "e745e167c1020928ef20ea1397b6b4d230681b4d"
},
"trimgalore": {
"branch": "master",
"git_sha": "85ec13ff1fc2196c5a507ea497de468101baabed"
},
"ucsc/bedgraphtobigwig": {
"branch": "master",
"git_sha": "233fa70811a03a4cecb2ece483b5c8396e2cee1d"
},
"untar": {
"branch": "master",
"git_sha": "51be617b1ca9bff973655eb899d591ed6ab253b5"
"nf-core": {
"bowtie2/align": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"bowtie2/build": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"bwa/index": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"bwa/mem": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"chromap/chromap": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"chromap/index": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"custom/dumpsoftwareversions": {
"branch": "master",
"git_sha": "8022c68e7403eecbd8ba9c49496f69f8c49d50f0"
},
"custom/getchromsizes": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905",
"patch": "modules/nf-core/custom/getchromsizes/custom-getchromsizes.diff"
},
"deeptools/computematrix": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"deeptools/plotfingerprint": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"deeptools/plotheatmap": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"deeptools/plotprofile": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"fastqc": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"gffread": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"gunzip": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"homer/annotatepeaks": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"khmer/uniquekmers": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"macs2/callpeak": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"phantompeakqualtools": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"picard/collectmultiplemetrics": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"picard/markduplicates": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"picard/mergesamfiles": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"preseq/lcextrap": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"samtools/flagstat": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"samtools/idxstats": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"samtools/index": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"samtools/sort": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"samtools/stats": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"subread/featurecounts": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"trimgalore": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"ucsc/bedgraphtobigwig": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
},
"untar": {
"branch": "master",
"git_sha": "5e34754d42cd2d5d248ca8673c0a53cdf5624905"
}
}
}
}
Expand Down
File renamed without changes.
File renamed without changes.
File renamed without changes.
File renamed without changes.

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

File renamed without changes.
File renamed without changes.
File renamed without changes.
File renamed without changes.
File renamed without changes.
File renamed without changes.
File renamed without changes.

Some generated files are not rendered by default. Learn more about how customized files appear on GitHub.

Loading

0 comments on commit 70f847c

Please sign in to comment.