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added new flag --reads_in_memory #33

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merged 8 commits into from
May 25, 2021
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SusiJo
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@SusiJo SusiJo commented May 20, 2021

PR checklist

  • This comment contains a description of changes (with reason)
  • If you've fixed a bug or added code that should be tested, add tests!
  • Make sure your code lints (nf-core lint .).
  • Documentation in docs is updated
  • CHANGELOG.md is updated

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@FriederikeHanssen FriederikeHanssen left a comment

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Looks great thank you very much for the addition! I think the if statement is obsolete, no?

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This looks great! Thank you for adding it. While you are at it, could you maybe also add a link to the samtools collate fast documentation to --samtools_collate_fast in usage docs? We are not really explaining what it actually does in our docs, and since it might have consequences for the output, it wouldn't hurt I think

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Feel free to merge this yourself once you are ready :)

@FriederikeHanssen FriederikeHanssen merged commit 5942fc4 into nf-core:dev May 25, 2021
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