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include MiXCR toolkit in nf-core/airrflow #1253

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include MiXCR toolkit in nf-core/airrflow

include MiXCR toolkit in nf-core/airrflow #1253

Triggered via pull request September 23, 2024 13:33
@mapo9mapo9
synchronize #346
mapo9:mixcr
Status Failure
Total duration 1h 32m 23s
Artifacts 3

ci.yml

on: pull_request
Matrix: Run pipeline with test data
Matrix: Run workflow test with different profiles
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9 errors and 26 warnings
Run workflow test with different profiles (23.04.0, test_mixcr_sc)
Process completed with exit code 1.
Run workflow test with different profiles (latest-everything, test_mixcr_sc)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
Run workflow test with different profiles (latest-everything, test_mixcr_sc)
Process completed with exit code 1.
Run workflow test with different profiles (latest-everything, test_mixcr_bulk)
Process completed with exit code 1.
Run workflow test with different profiles (23.04.0, test_mixcr_bulk)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
Run workflow test with different profiles (23.04.0, test_mixcr_bulk)
Process completed with exit code 1.
Run workflow test with different profiles (latest-everything, test_fetchimgt)
Failed to CreateArtifact: Received non-retryable error: Failed request: (409) Conflict: an artifact with this name already exists on the workflow run
Run workflow test with different profiles (latest-everything, test_fetchimgt)
Process completed with exit code 1.
Run workflow test with different profiles (23.04.0, test_fetchimgt)
Process completed with exit code 1.
Run workflow test with different profiles (23.04.0, test_mixcr_sc)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_mixcr_sc)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_mixcr_bulk)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (23.04.0, test_mixcr_bulk)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (23.04.0, test_rnaseq_bulk)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_rnaseq_bulk)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (23.04.0, test_rnaseq_sc)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (23.04.0, test_10x_sc)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_rnaseq_sc)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (23.04.0, test_no_umi)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_no_umi)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_10x_sc)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_assembled_mm)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_assembled_hs)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_nebnext_umi)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (23.04.0, test_nebnext_umi)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (23.04.0, test_assembled_mm)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (23.04.0, test_assembled_hs)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_clontech_umi)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (23.04.0, test_clontech_umi)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (23.04.0, test_nocluster)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_nocluster)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_tcr)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (23.04.0, test_tcr)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (latest-everything, test_fetchimgt)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/
Run workflow test with different profiles (23.04.0, test_fetchimgt)
The following actions use a deprecated Node.js version and will be forced to run on node20: actions/checkout@v3, nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

Artifacts

Produced during runtime
Name Size
logs-test_fetchimgt
136 MB
logs-test_mixcr_bulk
76.9 MB
logs-test_mixcr_sc
13.3 MB