Include clades as coloring

This commit adds the Nextclade genotype calls as coloring in auspice
nextstrain · May 1, 2024 · 751cb5c · 751cb5c
1 parent ef48277
commit 751cb5c
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Showing 3 changed files with 36 additions and 1 deletion.
diff --git a/phylogenetic/defaults/auspice_config.json b/phylogenetic/defaults/auspice_config.json
@@ -30,6 +30,11 @@
       "key": "genotype_ncbi",
       "title": "Genotype (NCBI)",
       "type": "categorical"
+    },
+    {
+      "key": "clade",
+      "title": "Genotype (Nextclade)",
+      "type": "categorical"
     }
   ],
   "geo_resolutions": [

diff --git a/phylogenetic/defaults/auspice_config_N450.json b/phylogenetic/defaults/auspice_config_N450.json
@@ -35,6 +35,11 @@
       "key": "is_reference",
       "title": "WHO reference",
       "type": "categorical"
+    },
+    {
+      "key": "clade",
+      "title": "Genotype (Nextclade)",
+      "type": "categorical"
     }
   ],
   "geo_resolutions": [

diff --git a/phylogenetic/defaults/colors.tsv b/phylogenetic/defaults/colors.tsv
@@ -4,7 +4,7 @@ region	Africa	#8ABB6A
 region	Europe	#BEBB48
 region	South America	#E29E39
 region	North America	#E2562B
-
+#
 genotype_ncbi	A	#5E1D9D
 genotype_ncbi	B1	#4B26B1
 genotype_ncbi	B2	#4138C3
@@ -29,3 +29,28 @@ genotype_ncbi	G2	#E67832
 genotype_ncbi	G3	#E35F2D
 genotype_ncbi	H1	#DF4328
 genotype_ncbi	H2	#DB2823
+#
+clade	A	#5E1D9D
+clade	B1	#4B26B1
+clade	B2	#4138C3
+clade	B3	#3F4FCC
+clade	C1	#4065CF
+clade	C2	#447ACD
+clade	D1	#4A8BC3
+clade	D2	#529AB6
+clade	D3	#5BA6A6
+clade	D4	#66AE95
+clade	D5	#73B583
+clade	D6	#81B973
+clade	D7	#91BC64
+clade	D8	#A1BE58
+clade	D9	#B1BD4E
+clade	D10	#C0BA47
+clade	D11	#CEB541
+clade	E	#DAAD3D
+clade	F	#E19F3A
+clade	G1	#E68E36
+clade	G2	#E67832
+clade	G3	#E35F2D
+clade	H1	#DF4328
+clade	H2	#DB2823