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Remove custom LBI color scale #1842

Merged
merged 1 commit into from
Aug 29, 2024
Merged

Remove custom LBI color scale #1842

merged 1 commit into from
Aug 29, 2024

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huddlej
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@huddlej huddlej commented Aug 29, 2024

Description of proposed changes

Closing an ancient TODO to remove the hardcoded color scale for LBI, since we can define custom scales now.

Example

See deployment of H3N2 HA tree colored by LBI.

Related issue(s)

Closes #805

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@nextstrain-bot nextstrain-bot temporarily deployed to auspice-remove-lbi-colo-okn9h3 August 29, 2024 17:57 Inactive
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@jameshadfield jameshadfield left a comment

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👍 do you think it's worth seeing which (current core) datasets use LBI, or are you fairly confident the ones which do already define a custom scale?

Ideally we'd add a changelog entry to the PRs, although I do try to add missing stuff to the changelog immediately prior to release

@huddlej
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huddlej commented Aug 29, 2024

I can add a change log note. Just checked the LBI for H3N2 HA 2y build in the deployment and it looks good. One other change that happened since 2018 is that LBI values got normalized to a max of 1, so the current auto-scale looks reasonable and generally should unless something goes terribly wrong with the LBI calculation.

@nextstrain-bot nextstrain-bot temporarily deployed to auspice-remove-lbi-colo-okn9h3 August 29, 2024 20:43 Inactive
@nextstrain-bot nextstrain-bot temporarily deployed to auspice-remove-lbi-colo-okn9h3 August 29, 2024 20:46 Inactive
@huddlej huddlej merged commit e6d9b40 into master Aug 29, 2024
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@huddlej huddlej deleted the remove-lbi-color-scale branch August 29, 2024 21:42
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Remove hardcoded range for LBI
3 participants