Add metadata to missing nodes

.pre-commit-config.yaml

@@ -1,7 +1,7 @@
 repos:
 - repo: https://github.com/astral-sh/ruff-pre-commit
   # Ruff version.
-  rev: v0.0.277
+  rev: v0.6.0
   hooks:
     - id: ruff
 
@@ -21,4 +21,4 @@ repos:
   rev: v1.7.5
   hooks:
     - id: docformatter
-      args: [--in-place, --black, --wrap-summaries=88, --wrap-descriptions=88]
+      args: [--in-place, --black, --wrap-summaries=88, --wrap-descriptions=88]

nir/ir/conv.py

@@ -106,6 +106,7 @@ class Conv2d(NIRNode):
     dilation: Union[int, Tuple[int, int]]  # Dilation
     groups: int  # Groups
     bias: np.ndarray  # Bias C_out
+    metadata: Dict[str, Any] = field(default_factory=dict)
 
     def __post_init__(self):
         if isinstance(self.padding, str) and self.padding not in ["same", "valid"]:

nir/ir/graph.py

@@ -452,6 +452,7 @@ class Input(NIRNode):
     # Shape of incoming data (overrrides input_type from
     # NIRNode to allow for non-keyword (positional) initialization)
     input_type: Types
+    metadata: Dict[str, Any] = field(default_factory=dict)
 
     def __post_init__(self):
         self.input_type = parse_shape_argument(self.input_type, "input")
@@ -479,6 +480,7 @@ class Output(NIRNode):
     # Type of incoming data (overrrides input_type from
     # NIRNode to allow for non-keyword (positional) initialization)
     output_type: Types
+    metadata: Dict[str, Any] = field(default_factory=dict)
 
     def __post_init__(self):
         self.output_type = parse_shape_argument(self.output_type, "output")

nir/ir/linear.py

@@ -46,6 +46,7 @@ class Linear(NIRNode):
     """
 
     weight: np.ndarray  # Weight term
+    metadata: Dict[str, Any] = field(default_factory=dict)
 
     def __post_init__(self):
         assert len(self.weight.shape) >= 2, "Weight must be at least 2D"
@@ -69,6 +70,7 @@ class Scale(NIRNode):
     """
 
     scale: np.ndarray  # Scaling factor
+    metadata: Dict[str, Any] = field(default_factory=dict)
 
     def __post_init__(self):
         self.input_type = {"input": np.array(self.scale.shape)}

nir/ir/pooling.py

@@ -29,6 +29,7 @@ class AvgPool2d(NIRNode):
     kernel_size: np.ndarray  # (Height, Width)
     stride: np.ndarray  # (Height, width)
     padding: np.ndarray  # (Height, width)
+    metadata: Dict[str, Any] = field(default_factory=dict)
 
     def __post_init__(self):
         self.input_type = {"input": None}

pyproject.toml

@@ -49,3 +49,5 @@ find={include = ["nir*"]}
 line-length = 100
 lint.per-file-ignores = {"docs/conf.py" = ["E402"]}
 exclude  = ["paper/"]
+extend-exclude = ["*.ipynb"]
+

tests/test_readwrite.py

@@ -1,11 +1,11 @@
-import tempfile
 import inspect
 import sys
+import tempfile
 
 import numpy as np
 
 import nir
-from tests import mock_affine, mock_conv
+from tests import mock_affine, mock_conv, mock_linear
 
 ALL_NODES = []
 for name, obj in inspect.getmembers(sys.modules["nir.ir"]):
@@ -47,7 +47,7 @@ def factory_test_graph(ir: nir.NIRGraph):
     assert_equivalence(ir, ir2)
 
 
-def factory_test_metadata(node):
+def factory_test_metadata(ir: nir.NIRGraph):
     def compare_dicts(d1, d2):
         for k, v in d1.items():
             if isinstance(v, np.ndarray):
@@ -58,12 +58,14 @@ def compare_dicts(d1, d2):
                 assert v == d2[k]
 
     metadata = {"some": "metadata", "with": 2, "data": np.array([1, 2, 3])}
-    node.metadata = metadata
-    compare_dicts(node.metadata, metadata)
+    for node in ir.nodes.values():
+        node.metadata = metadata
+        compare_dicts(node.metadata, metadata)
     tmp = tempfile.mktemp()
-    nir.write(tmp, node)
-    node2 = nir.read(tmp)
-    compare_dicts(node2.metadata, metadata)
+    nir.write(tmp, ir)
+    ir2 = nir.read(tmp)
+    for node in ir2.nodes.values():
+        compare_dicts(node.metadata, metadata)
 
 
 def test_simple():
@@ -146,7 +148,7 @@ def test_linear():
     tau = np.array([1, 1, 1])
     r = np.array([1, 1, 1])
     v_leak = np.array([1, 1, 1])
-    ir = nir.NIRGraph.from_list(mock_affine(2, 2), nir.LI(tau, r, v_leak))
+    ir = nir.NIRGraph.from_list(mock_linear(2, 2), nir.LI(tau, r, v_leak))
     factory_test_graph(ir)
     factory_test_metadata(ir)