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install brainlit netlify #268

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Apr 30, 2021
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7b09c7a
install brainlit netlify
tathey1 Apr 28, 2021
129974d
Update conf.py
tathey1 Apr 28, 2021
3cb037a
only one notebook
tathey1 Apr 28, 2021
fb909e1
Update conf.py
tathey1 Apr 28, 2021
08bf158
comment out napari
tathey1 Apr 28, 2021
a089e74
remove pipelines
tathey1 Apr 28, 2021
9b78839
remove utils from docs
tathey1 Apr 28, 2021
35fc581
remove viz nbw
tathey1 Apr 28, 2021
92b397c
remove some notebooks
tathey1 Apr 28, 2021
ece4f36
Merge branch 'develop' into tathey1-installbrainlitdocs
tathey1 Apr 29, 2021
58ba70b
add viz notebooks
tathey1 Apr 29, 2021
69f5ccf
allow viz
tathey1 Apr 29, 2021
9b5e710
pipelines updates
tathey1 Apr 29, 2021
00a7f33
fixed downloading brains
tathey1 Apr 29, 2021
2c5333a
changed uploading brains
tathey1 Apr 29, 2021
df24087
remove utils, add more pipelines
tathey1 Apr 29, 2021
db5ad2d
update notebooks
tathey1 Apr 29, 2021
70e3c84
final changes
tathey1 Apr 29, 2021
7784d2d
execture notebooks
tathey1 Apr 30, 2021
6c3a5bd
downloading benchmarking
tathey1 Apr 30, 2021
061a187
move viewer
tathey1 Apr 30, 2021
5a246a1
fix boto
tathey1 Apr 30, 2021
c7ec473
comment out downloading benchmarking
tathey1 Apr 30, 2021
4340fb9
comment out loading
tathey1 Apr 30, 2021
db41625
comment nbrhdood viz demo
tathey1 Apr 30, 2021
48b6d72
commnt viz
tathey1 Apr 30, 2021
3e872d4
some fixes
tathey1 Apr 30, 2021
b3ec0b5
comment upload brains
tathey1 Apr 30, 2021
a4b94c7
some comments
tathey1 Apr 30, 2021
76775db
more comments
tathey1 Apr 30, 2021
fe9c3be
more comments
tathey1 Apr 30, 2021
58580bc
more comments
tathey1 Apr 30, 2021
3d9a453
uncomment neurontrace
tathey1 Apr 30, 2021
81642c2
comment viz
tathey1 Apr 30, 2021
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2 changes: 1 addition & 1 deletion brainlit/feature_extraction/base.py
Original file line number Diff line number Diff line change
Expand Up @@ -184,7 +184,7 @@ def _serial_processing(
if self.segment_url is None:
segment = ngl.cv.skeleton.get(seg_id)
else:
cv_skel = CloudVolume(self.segment_url)
cv_skel = CloudVolume(self.segment_url, use_https=True)
segment = cv_skel.skeleton.get(seg_id)
if num_verts is not None and num_verts <= len(segment.vertices):
if num_verts <= len(segment.vertices):
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1 change: 1 addition & 0 deletions docs/conf.py
Original file line number Diff line number Diff line change
Expand Up @@ -48,6 +48,7 @@
autoapi_dirs = ["../brainlit"]
autoapi_add_toctree_entry = False
autoapi_generate_api_docs = False
nbsphinx_execute = 'always'

# -- sphinxcontrib.rawfiles
# rawfiles = ["CNAME"]
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340 changes: 130 additions & 210 deletions docs/notebooks/algorithms/adaptive_thresh_tutorial.ipynb

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150 changes: 0 additions & 150 deletions docs/notebooks/algorithms/log_regression_classifiers_tutorial.ipynb

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210 changes: 0 additions & 210 deletions docs/notebooks/features/features.ipynb

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