You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
the output directory now contains a json file that is compatible with auspice.us. Both time scaled phylogenies and ancestral inferences can now be visualized and explored using auspice. Available colorings are "Date", "genotype", "Branch support", and "Excluded". See PR #232 for details.
move most function related to IO of the command line wrappers into a separate file.
make TreeTime own its random number generator and add --rng-seed to control state in CLI. Any previous usage of numpy.random.seed will now be ignored in favor of --rng-seed. See PR #234
add flag --greedy-resolve (currently default) as inverse to --stochastic-resolve with the aim of switching the default behavior in the future.
Add deprecation warning for greedy-resolve.
tighten conditions that trigger approximation of narrow distribution as a delta function in convolution using FFT PR #235.
Drop support for python 3.6.
Don't attempt to show figure when calling Phylo.draw to suppress matplotlib back-end warning.