GitHub - mgcam/npg_qc: QC checks and metrics for Illumina NGS data

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QC checks and metrics for Illumina NGS data

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Name		Name	Last commit message	Last commit date
Latest commit History 3,062 Commits
.travis		.travis
bin		bin
docs		docs
lib/npg_qc		lib/npg_qc
npg_qc_viewer		npg_qc_viewer
scripts		scripts
t		t
.dir-locals.el		.dir-locals.el
.gitignore		.gitignore
.travis.yml		.travis.yml
Build.PL		Build.PL
Changes		Changes
MANIFEST		MANIFEST
README		README

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QC Checks and Metrics for Illumina Next Generation Sequencing Data
==================================================================

lib directory:
---------------
 npg_qc::Schema namespace - DBIx db binding
 npg_qc::illumina - db loaders for Illumina QC metrics
 npg_qc::autoqc namespace - WTSI core sequencing pipeline inhouse
     QC checks and storage of QC results

bin directory:
--------------
 perl scripts

scripts directory:
------------------
 supplimentary scripts

src directory:
--------------
 Moved to https://github.com/wtsi-npg/npg_qc_utils

t directory:
------------
 tests
 test data
 supplimentary scripts and modules for testing