Allow OxidationStateDoc to skip assignment if oxidation states are already assigned
#1126
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Opening this PR in draft since I have not tested it yet. It will need linting.
It improves a common log message (changing
error->debug) to be less misleading, since this is not an error creating the document but just a failure of a specific method of oxidation state assignment. It also addresses aTODOto allow oxidation assignment logic to be skipped if the input structure already has oxidation states assigned.