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Release v1.7.3
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@bkille bkille released this 05 Jul 22:05
· 118 commits to master since this release
v1.7.3
998ebc5

The --extend-lcbs parameter now performs a gapped alignment using either muscle (>50nt) or abpoa (<=50nt) on inter-LCB regions. Alignments are trimmed back based on an ANI parameter that can also be provided by the user (i.e., cuts alignment off when it falls below 95% ANI). This parameter still only works w/ single contig genomes.

Also added better SeqIO validation. Throws out any genomes that can't be parsed.

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