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linkml · Jan 9, 2024 · 76b8092 · 76b8092
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diff --git a/genindex.html b/genindex.html
@@ -581,7 +581,7 @@ <h2 id="V">V</h2>
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2023, Chris Mungall.</p>
+    <p>&#169; Copyright 2024, Chris Mungall.</p>
   </div>
 
   Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a

diff --git a/index.html b/index.html
@@ -110,7 +110,7 @@ <h1>Indices and tables<a class="headerlink" href="#indices-and-tables" title="Li
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2023, Chris Mungall.</p>
+    <p>&#169; Copyright 2024, Chris Mungall.</p>
   </div>
 
   Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a

diff --git a/intro.html b/intro.html
@@ -239,7 +239,7 @@ <h2>Requesting new prefixes<a class="headerlink" href="#requesting-new-prefixes"
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2023, Chris Mungall.</p>
+    <p>&#169; Copyright 2024, Chris Mungall.</p>
   </div>
 
   Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a

diff --git a/modules.html b/modules.html
@@ -174,7 +174,7 @@ <h1>Modules<a class="headerlink" href="#modules" title="Link to this heading">
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2023, Chris Mungall.</p>
+    <p>&#169; Copyright 2024, Chris Mungall.</p>
   </div>
 
   Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a

diff --git a/prefixmaps.data.html b/prefixmaps.data.html
@@ -93,7 +93,7 @@ <h1>prefixmaps.data package<a class="headerlink" href="#prefixmaps-data-package"
 <span id="module-contents"></span><h2>Module contents<a class="headerlink" href="#module-prefixmaps.data" title="Link to this heading"></a></h2>
 <dl class="py data">
 <dt class="sig sig-object py" id="prefixmaps.data.context_paths">
-<span class="sig-prename descclassname"><span class="pre">prefixmaps.data.</span></span><span class="sig-name descname"><span class="pre">context_paths</span></span><em class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">Mapping</span><span class="p"><span class="pre">[</span></span><span class="pre">str</span><span class="p"><span class="pre">,</span></span><span class="w"> </span><span class="pre">Path</span><span class="p"><span class="pre">]</span></span></em><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">{'bioportal':</span> <span class="pre">PosixPath('/home/runner/work/prefixmaps/prefixmaps/src/prefixmaps/data/bioportal.csv'),</span> <span class="pre">'bioregistry':</span> <span class="pre">PosixPath('/home/runner/work/prefixmaps/prefixmaps/src/prefixmaps/data/bioregistry.csv'),</span> <span class="pre">'bioregistry.upper':</span> <span class="pre">PosixPath('/home/runner/work/prefixmaps/prefixmaps/src/prefixmaps/data/bioregistry.upper.csv'),</span> <span class="pre">'go':</span> <span class="pre">PosixPath('/home/runner/work/prefixmaps/prefixmaps/src/prefixmaps/data/go.csv'),</span> <span class="pre">'linked_data':</span> <span class="pre">PosixPath('/home/runner/work/prefixmaps/prefixmaps/src/prefixmaps/data/linked_data.csv'),</span> <span class="pre">'merged':</span> <span class="pre">PosixPath('/home/runner/work/prefixmaps/prefixmaps/src/prefixmaps/data/merged.csv'),</span> <span class="pre">'merged.oak':</span> <span class="pre">PosixPath('/home/runner/work/prefixmaps/prefixmaps/src/prefixmaps/data/merged.oak.csv'),</span> <span class="pre">'obo':</span> <span class="pre">PosixPath('/home/runner/work/prefixmaps/prefixmaps/src/prefixmaps/data/obo.csv'),</span> <span class="pre">'prefixcc':</span> <span class="pre">PosixPath('/home/runner/work/prefixmaps/prefixmaps/src/prefixmaps/data/prefixcc.csv'),</span> <span class="pre">'w3id':</span> <span class="pre">PosixPath('/home/runner/work/prefixmaps/prefixmaps/src/prefixmaps/data/w3id.csv')}</span></em><a class="headerlink" href="#prefixmaps.data.context_paths" title="Link to this definition"></a></dt>
+<span class="sig-prename descclassname"><span class="pre">prefixmaps.data.</span></span><span class="sig-name descname"><span class="pre">context_paths</span></span><em class="property"><span class="p"><span class="pre">:</span></span><span class="w"> </span><span class="pre">Mapping</span><span class="p"><span class="pre">[</span></span><span class="pre">str</span><span class="p"><span class="pre">,</span></span><span class="w"> </span><span class="pre">Path</span><span class="p"><span class="pre">]</span></span></em><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">{'bioportal':</span> <span class="pre">PosixPath('/home/runner/work/prefixmaps/prefixmaps/src/prefixmaps/data/bioportal.csv'),</span> <span class="pre">'bioregistry':</span> <span class="pre">PosixPath('/home/runner/work/prefixmaps/prefixmaps/src/prefixmaps/data/bioregistry.csv'),</span> <span class="pre">'bioregistry.upper':</span> <span class="pre">PosixPath('/home/runner/work/prefixmaps/prefixmaps/src/prefixmaps/data/bioregistry.upper.csv'),</span> <span class="pre">'go':</span> <span class="pre">PosixPath('/home/runner/work/prefixmaps/prefixmaps/src/prefixmaps/data/go.csv'),</span> <span class="pre">'linked_data':</span> <span class="pre">PosixPath('/home/runner/work/prefixmaps/prefixmaps/src/prefixmaps/data/linked_data.csv'),</span> <span class="pre">'merged':</span> <span class="pre">PosixPath('/home/runner/work/prefixmaps/prefixmaps/src/prefixmaps/data/merged.csv'),</span> <span class="pre">'merged.monarch':</span> <span class="pre">PosixPath('/home/runner/work/prefixmaps/prefixmaps/src/prefixmaps/data/merged.monarch.csv'),</span> <span class="pre">'merged.oak':</span> <span class="pre">PosixPath('/home/runner/work/prefixmaps/prefixmaps/src/prefixmaps/data/merged.oak.csv'),</span> <span class="pre">'obo':</span> <span class="pre">PosixPath('/home/runner/work/prefixmaps/prefixmaps/src/prefixmaps/data/obo.csv'),</span> <span class="pre">'prefixcc':</span> <span class="pre">PosixPath('/home/runner/work/prefixmaps/prefixmaps/src/prefixmaps/data/prefixcc.csv'),</span> <span class="pre">'w3id':</span> <span class="pre">PosixPath('/home/runner/work/prefixmaps/prefixmaps/src/prefixmaps/data/w3id.csv')}</span></em><a class="headerlink" href="#prefixmaps.data.context_paths" title="Link to this definition"></a></dt>
 <dd><p>A mapping from contexts to their paths</p>
 </dd></dl>
 
@@ -111,7 +111,7 @@ <h1>prefixmaps.data package<a class="headerlink" href="#prefixmaps-data-package"
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2023, Chris Mungall.</p>
+    <p>&#169; Copyright 2024, Chris Mungall.</p>
   </div>
 
   Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a

diff --git a/prefixmaps.datamodel.html b/prefixmaps.datamodel.html
@@ -464,7 +464,7 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Link to this headi
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2023, Chris Mungall.</p>
+    <p>&#169; Copyright 2024, Chris Mungall.</p>
   </div>
 
   Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a

diff --git a/prefixmaps.html b/prefixmaps.html
@@ -636,7 +636,7 @@ <h2>Subpackages<a class="headerlink" href="#subpackages" title="Link to this hea
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2023, Chris Mungall.</p>
+    <p>&#169; Copyright 2024, Chris Mungall.</p>
   </div>
 
   Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a

diff --git a/prefixmaps.ingest.html b/prefixmaps.ingest.html
@@ -97,7 +97,7 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Link to this headi
 <p>ETL logic for retrieving and normalizing upstream contexts.</p>
 <dl class="py data">
 <dt class="sig sig-object py" id="prefixmaps.ingest.etl_runner.COMBINED">
-<span class="sig-prename descclassname"><span class="pre">prefixmaps.ingest.etl_runner.</span></span><span class="sig-name descname"><span class="pre">COMBINED</span></span><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">{'merged':</span> <span class="pre">['obo',</span> <span class="pre">'go',</span> <span class="pre">'linked_data',</span> <span class="pre">'bioregistry.upper',</span> <span class="pre">'prefixcc'],</span> <span class="pre">'merged.oak':</span> <span class="pre">['obo',</span> <span class="pre">'go',</span> <span class="pre">'linked_data',</span> <span class="pre">'bioregistry.upper',</span> <span class="pre">'prefixcc']}</span></em><a class="headerlink" href="#prefixmaps.ingest.etl_runner.COMBINED" title="Link to this definition"></a></dt>
+<span class="sig-prename descclassname"><span class="pre">prefixmaps.ingest.etl_runner.</span></span><span class="sig-name descname"><span class="pre">COMBINED</span></span><em class="property"><span class="w"> </span><span class="p"><span class="pre">=</span></span><span class="w"> </span><span class="pre">{'merged':</span> <span class="pre">['obo',</span> <span class="pre">'go',</span> <span class="pre">'linked_data',</span> <span class="pre">'bioregistry.upper',</span> <span class="pre">'prefixcc'],</span> <span class="pre">'merged.monarch':</span> <span class="pre">['obo',</span> <span class="pre">'go',</span> <span class="pre">'linked_data',</span> <span class="pre">'bioregistry.upper',</span> <span class="pre">'prefixcc'],</span> <span class="pre">'merged.oak':</span> <span class="pre">['obo',</span> <span class="pre">'go',</span> <span class="pre">'linked_data',</span> <span class="pre">'bioregistry.upper',</span> <span class="pre">'prefixcc']}</span></em><a class="headerlink" href="#prefixmaps.ingest.etl_runner.COMBINED" title="Link to this definition"></a></dt>
 <dd><p>Contexts that remix other contexts. Order is significant, with the first listed having highest precedence.</p>
 </dd></dl>
 
@@ -478,7 +478,7 @@ <h2>prefixmaps.ingest.ingest module<a class="headerlink" href="#prefixmaps-inges
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2023, Chris Mungall.</p>
+    <p>&#169; Copyright 2024, Chris Mungall.</p>
   </div>
 
   Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a

diff --git a/prefixmaps.io.html b/prefixmaps.io.html
@@ -186,7 +186,7 @@ <h2>Submodules<a class="headerlink" href="#submodules" title="Link to this headi
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2023, Chris Mungall.</p>
+    <p>&#169; Copyright 2024, Chris Mungall.</p>
   </div>
 
   Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a

diff --git a/py-modindex.html b/py-modindex.html
@@ -163,7 +163,7 @@ <h1>Python Module Index</h1>
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2023, Chris Mungall.</p>
+    <p>&#169; Copyright 2024, Chris Mungall.</p>
   </div>
 
   Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a

diff --git a/search.html b/search.html
@@ -91,7 +91,7 @@
   <hr/>
 
   <div role="contentinfo">
-    <p>&#169; Copyright 2023, Chris Mungall.</p>
+    <p>&#169; Copyright 2024, Chris Mungall.</p>
   </div>
 
   Built with <a href="https://www.sphinx-doc.org/">Sphinx</a> using a

diff --git a/searchindex.js b/searchindex.js