Merge pull request #15 from cthoyt/add-guarantees

Add data integrity tests
linkml · Oct 25, 2022 · 47842b6 · 47842b6
2 parents 0348de6 + 1a57104
commit 47842b6
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Showing 6 changed files with 194 additions and 105 deletions.
diff --git a/.gitignore b/.gitignore
@@ -1,6 +1,7 @@
 .idea
 .vscode
 __pycache__
+.pyc
 .ipynb_checkpoints/
 docs/_build/
 tests/output/
@@ -11,8 +12,6 @@ db/
 notebooks/output/*json
 notebooks/output/*tsv
 notebooks/input/go.db
-
-
 notebooks/api-key.txt
 
 .template.db

diff --git a/poetry.lock b/poetry.lock
diff --git a/pyproject.toml b/pyproject.toml
@@ -14,7 +14,7 @@ importlib-metadata = "^4.12.0"
 pytest = "^5.2"
 bioregistry = "^0.5.54"
 linkml = "^1.3.1"
-curies = "^0.2.0"
+curies = "^0.3.0"
 coverage = "^6.4.4"
 
 [tool.poetry.extras]

diff --git a/src/prefixmaps/data/__init__.py b/src/prefixmaps/data/__init__.py
@@ -1,3 +1,12 @@
 from pathlib import Path
+from typing import Mapping
+
+__all__ = [
+    "data_path",
+    "context_paths",
+]
 
 data_path = Path(__file__).parent
+
+#: A mapping from contexts to their paths
+context_paths: Mapping[str, Path] = {path.stem: path for path in data_path.glob("*.csv")}