Merge pull request #7 from jordanlab/v1.1.2

Update `tagore` packaging to best practices

README.md

@@ -21,7 +21,7 @@
 ```bash
 pip install tagore
 tagore --version
-# tagore (version 1.0.1)
+# tagore (version 1.1.2)
 ```
 
 ### Requirements
@@ -60,13 +60,13 @@ Helper scripts for converting RFMix and ADMIXTURE outputs are included in the `s
 A more complete example of a full chromosome painting using an RFMix output can be seen by running:
 
 ```bash
-./scripts/rfmix2tagore.py --chr1 example_ideogram/1KGP-MXL104_chr1.bed \
+rfmix2tagore --chr1 example_ideogram/1KGP-MXL104_chr1.bed \
 	--chr2 example_ideogram/1KGP-MXL104_chr2.bed \
 	--out example_ideogram/1KGP-MXL104_tagore.bed
 
 tagore --input example_ideogram/1KGP-MXL104_tagore.bed \
 	--prefix example_ideogram/1KGP-MXL104 \
-  --build hg37
+  --build hg37 \
   --verbose
 
 ```

pyproject.toml

@@ -0,0 +1,3 @@
+[build-system]
+requires = ["setuptools"]
+build-backend = "setuptools.build_meta"

setup.cfg

@@ -0,0 +1,43 @@
+[metadata]
+name = tagore
+version = 1.1.2
+author = Applied Bioinformatics Laboratory
+author_email = abil@ihrc.com
+description = A simple way to visualize features on human chromosome ideograms
+keywords =
+    Human
+    chromosome
+    ideogram
+    visualization
+url = https://github.com/jordanlab/tagore
+long_description = file: README.md
+long_description_content_type = text/markdown
+classifiers =
+    Programming Language :: Python :: 3
+    License :: OSI Approved :: GNU General Public License v3 (GPLv3)
+    Operating System :: MacOS
+    Operating System :: POSIX
+    Environment :: Console
+    Development Status :: 5 - Production/Stable
+    Topic :: Scientific/Engineering :: Visualization
+
+[options]
+name = tagore
+packages = find_namespace:  
+include_package_data = True
+install_requires = click
+python_requires = >=3.6
+# scripts = tagore/scripts/rfmix2tagore.py
+
+[options.packages.find]
+where=src
+exclude=tagore.tests*
+
+[options.entry_points]
+console_scripts =
+    tagore = tagore.main:run
+    rfmix2tagore = tagore.scripts.rfmix2tagore:main
+
+
+[options.package_data]
+* = *.svg.p

src/tagore/__init__.py

@@ -0,0 +1 @@
+# from . import run