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Alpha 3 Merge #1

Merged
merged 33 commits into from
Oct 14, 2017
Merged

Alpha 3 Merge #1

merged 33 commits into from
Oct 14, 2017

Commits on May 31, 2017

  1. Changes project name and adds namespace.

    @jonathonl
    jonathonl committed May 31, 2017
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Commits on Jun 1, 2017

  1. Adds gz reader and bgzf writer.

    @jonathonl
    jonathonl committed Jun 1, 2017
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  2. Updates readme.

    @jonathonl
    jonathonl committed Jun 1, 2017
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  3. Adds bgzf support.

    @jonathonl
    jonathonl committed Jun 1, 2017
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  4. Fixes test commands.

    @jonathonl
    jonathonl committed Jun 1, 2017
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Commits on Jun 2, 2017

  1. Adds ogzbuf and updates target names.

    @jonathonl
    jonathonl committed Jun 2, 2017
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  2. Minor changes.

    @jonathonl
    jonathonl committed Jun 2, 2017
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  3. Updates bgz seek test.

    @jonathonl
    jonathonl committed Jun 2, 2017
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  4. Example of actual bgzf. 

    This commit is a temporary untested example of actual bgzf. I find the the encoding of compressed block size into the header a counterproductive solution to a problem that does not exist. So this code will be replaced with a simpler version of blocked gzip that only restricts the uncompressed data size as opposed to both uncompressed and compressed.
    @jonathonl
    jonathonl committed Jun 2, 2017
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  5. Reverting actual bgzf implementation.

    @jonathonl
    jonathonl committed Jun 2, 2017
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Commits on Jun 14, 2017

  1. Changes naming structure.

    @jonathonl
    jonathonl committed Jun 14, 2017
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  2. Checks in generic istream.

    @jonathonl
    jonathonl committed Jun 14, 2017
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Commits on Jun 15, 2017

  1. Adds generic istream tests.

    @jonathonl
    jonathonl committed Jun 15, 2017
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  2. Updates readme with new naming structure.

    @jonathonl
    jonathonl committed Jun 15, 2017
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Commits on Jun 28, 2017

  1. Fixes bgzf virtual offset bugs.

    @jonathonl
    jonathonl committed Jun 28, 2017
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Commits on Jul 2, 2017

  1. Adds initial zstd support.

    @jonathonl
    jonathonl committed Jul 2, 2017
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  2. Fixes build error.

    @jonathonl
    jonathonl committed Jul 2, 2017
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  3. Fixes zlib flush issue.

    @jonathonl
    jonathonl committed Jul 2, 2017
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Commits on Jul 4, 2017

  1. Adds zstd seek support.

    @jonathonl
    jonathonl committed Jul 4, 2017
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Commits on Jul 7, 2017

  1. Fixes move bug in zstd::ibuf.

    @jonathonl
    jonathonl committed Jul 7, 2017
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Commits on Jul 8, 2017

  1. Adds zstd.cmake.

    @jonathonl
    jonathonl committed Jul 8, 2017
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  2. Addresses gcc bug 54316.

    @jonathonl
    jonathonl committed Jul 8, 2017
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  3. Addresses gcc bug 54316.

    @jonathonl
    jonathonl committed Jul 8, 2017
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Commits on Jul 9, 2017

  1. Fixes premature end of file.

    @jonathonl
    jonathonl committed Jul 9, 2017
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  2. Removes unnecessary assert.

    @jonathonl
    jonathonl committed Jul 9, 2017
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Commits on Jul 20, 2017

  1. Adds cmake 3.2 support.

    @jonathonl
    jonathonl committed Jul 20, 2017
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  2. Attempts to fix cmake issues.

    @jonathonl
    jonathonl committed Jul 20, 2017
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  3. Attempts to fix cmake issues.

    @jonathonl
    jonathonl committed Jul 20, 2017
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  4. Attempts to fix cmake issues.

    @jonathonl
    jonathonl committed Jul 20, 2017
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  5. Attempts to fix cmake issues.

    @jonathonl
    jonathonl committed Jul 20, 2017
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  6. Attempts to fix cmake issues.

    @jonathonl
    jonathonl committed Jul 20, 2017
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Commits on Sep 28, 2017

  1. Adds optional compression level parameter to zstd::obuf.

    @jonathonl
    jonathonl committed Sep 28, 2017
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Commits on Oct 14, 2017

  1. Prevents zstd shared libs from being built since advanced api is requ… 

    …ired.
    @jonathonl
    jonathonl committed Oct 14, 2017
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