Mongo c driver 1.26.2

.github/workflows/R-CMD-check.yaml

@@ -17,32 +17,46 @@ jobs:
 #      max-parallel: 2 #try to avoid races due to concurrent db access
       matrix:
         config:
-          - {os: macOS-latest,   r: 'release'}
-          - {os: windows-latest, r: '3.6'}
+          - {os: macOS-13,   r: 'release'}
+          - {os: macOS-14,   r: 'release'}
           - {os: windows-latest, r: '4.1'}
           - {os: windows-latest, r: 'release'}
           - {os: windows-latest, r: 'devel'}
           - {os: ubuntu-20.04,   r: 'devel', http-user-agent: 'release'}
           - {os: ubuntu-20.04,   r: 'release'}
-          - {os: ubuntu-20.04,    r: 'oldrel-4'}
+          - {os: ubuntu-20.04,   r: 'oldrel-4'}
 
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
       R_KEEP_PKG_SOURCE: yes
 
     steps:
-      - uses: actions/checkout@v3
+      - uses: actions/checkout@v4
 
       - if: runner.os == 'macos'
-        run: brew services start $(brew list --formula | grep mongodb-community)
+        run: |
+          brew tap mongodb/brew
+          brew install mongodb-community@7.0
+          brew services start $(brew list --formula | grep mongodb-community)
 
       - if: runner.os == 'linux'
         run: sudo systemctl restart mongod
 
       - if: runner.os == 'windows'
+        continue-on-error: true
         run: |
           Set-Service mongodb -StartupType Automatic
-          Start-Service -Name mongodb
+          Do {
+            try {
+              Write-Host "Trying to start MongoDB..."
+              Start-Service MongoDB
+            }
+            catch {
+              "Failure occurred in Start-Service MongoDB."
+            }
+            Start-Sleep -Seconds 5
+            $Service = Get-Service MongoDB
+          } Until ($Service.Status -eq "Running")
 
       - uses: r-lib/actions/setup-r@v2
         with:

DESCRIPTION

@@ -5,7 +5,7 @@ Description: High-performance MongoDB client based on 'mongo-c-driver' and 'json
     Includes support for aggregation, indexing, map-reduce, streaming, encryption,
     enterprise authentication, and GridFS. The online user manual provides an overview 
     of the available methods in the package: <https://jeroen.github.io/mongolite/>.
-Version: 2.7.3
+Version: 2.8.0
 Authors@R: c(
     person("Jeroen", "Ooms", ,"jeroen@berkeley.edu", role = c("aut", "cre"),
       comment = c(ORCID = "0000-0002-4035-0289")),

NEWS

@@ -1,3 +1,6 @@
+2.8.0
+ - Update vendored mongo-c-driver to 1.26.2
+
 2.7.3
  - Fix some printf warnings for CRAN
 

src/Makevars.in

@@ -1,4 +1,5 @@
-PKG_CPPFLAGS=-I. -Icommon -Ikms \
+PKG_CPPFLAGS=-I. -Icommon -Ikms -Iutf8proc \
+	-D_XOPEN_SOURCE=700 -D_DEFAULT_SOURCE \
 	-DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_LIBCRYPTO \
 	-DBSON_COMPILATION -DMONGOC_COMPILATION -DOPENSSL_SUPPRESS_DEPRECATED @cflags@
 
@@ -29,8 +30,8 @@ LIBMONGOC=mongoc/mongoc-array.o common/common-b64.o mongoc/mongoc-buffer.o \
 	mongoc/mongoc-stream-tls-openssl.o mongoc/mongoc-stream-tls-openssl-bio.o \
 	mongoc/mongoc-cluster-sasl.o mongoc/mongoc-cmd.o \
 	mongoc/mongoc-change-stream.o mongoc/mongoc-client-session.o mongoc/mongoc-cluster-cyrus.o \
-	mongoc/mongoc-compression.o mongoc/mongoc-cyrus.o mongoc/mongoc-write-command-legacy.o \
-	mongoc/mongoc-linux-distro-scanner.o mongoc/mongoc-stream-file.o \
+	mongoc/mongoc-compression.o mongoc/mongoc-cyrus.o \
+	mongoc/mongoc-linux-distro-scanner.o mongoc/mongoc-stream-file.o mongoc/mcd-rpc.o mongoc/mongoc-deprioritized-servers.o \
 	mongoc/mongoc-opts.o mongoc/mongoc-opts-helpers.o \
 	mongoc/mongoc-cursor-cmd.o mongoc/mongoc-cursor-cmd-deprecated.o \
 	mongoc/mongoc-cursor-find.o mongoc/mongoc-cursor-find-cmd.o mongoc/mongoc-cursor-find-opquery.o \
@@ -39,7 +40,7 @@ LIBMONGOC=mongoc/mongoc-array.o common/common-b64.o mongoc/mongoc-buffer.o \
 	mongoc/mongoc-cluster-aws.o mongoc/mongoc-generation-map.o mongoc/mongoc-timeout.o \
 	mongoc/mongoc-server-monitor.o mongoc/mongoc-topology-background-monitoring.o common/common-thread.o \
 	mongoc/mongoc-optional.o mongoc/mongoc-server-api.o mongoc/mongoc-http.o mongoc/mongoc-ocsp-cache.o \
-	mongoc/mongoc-shared.o mongoc/mongoc-ts-pool.o
+	mongoc/mongoc-shared.o mongoc/mongoc-ts-pool.o utf8proc/utf8proc.o
 
 LIBKMS=kms/hexlify.o kms/kms_crypto_windows.o kms/kms_kv_list.o kms/kms_request.o \
 	kms/kms_response.o kms/kms_b64.o kms/kms_crypto_libcrypto.o kms/kms_decrypt_request.o kms/kms_message.o \

src/Makevars.win

@@ -1,9 +1,10 @@
 PKG_CPPFLAGS = \
-	-I. -Icommon -Ikms \
+	-I. -Icommon -Ikms -Iutf8proc \
 	-DBSON_COMPILATION -DMONGOC_COMPILATION \
 	-DMONGOC_ENABLE_SSL_SECURE_CHANNEL -DMONGOC_ENABLE_CRYPTO_CNG \
 	-DKMS_MESSAGE_ENABLE_CRYPTO -DKMS_MESSAGE_ENABLE_CRYPTO_CNG \
-	-DMONGOC_HAVE_SASL_CLIENT_DONE -D__USE_MINGW_ANSI_STDIO
+	-DMONGOC_HAVE_SASL_CLIENT_DONE -D__USE_MINGW_ANSI_STDIO \
+	-DKMS_MESSAGE_LITTLE_ENDIAN -DUTF8PROC_STATIC
 
 PKG_LIBS = \
 	-L. -Lmongoc -lstatmongoc \
@@ -35,9 +36,9 @@ LIBMONGOC=mongoc/mongoc-array.o common/common-b64.o mongoc/mongoc-buffer.o \
 	mongoc/mongoc-read-concern.o mongoc/mongoc-secure-channel.o mongoc/mongoc-apm.o \
 	mongoc/mongoc-crypto.o mongoc/mongoc-crypto-common-crypto.o mongoc/mongoc-crypto-cng.o mongoc/mongoc-handshake.o \
 	mongoc/mongoc-stream-tls-secure-channel.o \
-	mongoc/mongoc-cluster-sasl.o mongoc/mongoc-cmd.o mongoc/mongoc-stream-file.o \
+	mongoc/mongoc-cluster-sasl.o mongoc/mongoc-cmd.o mongoc/mongoc-stream-file.o mongoc/mcd-rpc.o mongoc/mongoc-deprioritized-servers.o \
 	mongoc/mongoc-change-stream.o mongoc/mongoc-client-session.o \
-	mongoc/mongoc-compression.o mongoc/mongoc-write-command-legacy.o \
+	mongoc/mongoc-compression.o \
 	mongoc/mongoc-sspi.o mongoc/mongoc-cluster-sspi.o mongoc/mongoc-queue.o \
 	mongoc/mongoc-opts.o mongoc/mongoc-opts-helpers.o \
 	mongoc/mongoc-cursor-cmd.o mongoc/mongoc-cursor-cmd-deprecated.o \
@@ -47,12 +48,13 @@ LIBMONGOC=mongoc/mongoc-array.o common/common-b64.o mongoc/mongoc-buffer.o \
 	mongoc/mongoc-cluster-aws.o mongoc/mongoc-generation-map.o mongoc/mongoc-timeout.o \
 	mongoc/mongoc-server-monitor.o mongoc/mongoc-topology-background-monitoring.o common/common-thread.o \
 	mongoc/mongoc-optional.o mongoc/mongoc-server-api.o mongoc/mongoc-http.o mongoc/mongoc-ocsp-cache.o \
-	mongoc/mongoc-shared.o mongoc/mongoc-ts-pool.o
+	mongoc/mongoc-shared.o mongoc/mongoc-ts-pool.o utf8proc/utf8proc.o
 
 LIBKMS=kms/hexlify.o kms/kms_crypto_windows.o kms/kms_kv_list.o kms/kms_request.o \
 	kms/kms_response.o kms/kms_b64.o kms/kms_crypto_libcrypto.o kms/kms_decrypt_request.o kms/kms_message.o \
 	kms/kms_request_opt.o kms/kms_response_parser.o kms/kms_caller_identity_request.o	\
-	kms/kms_encrypt_request.o kms/kms_port.o kms/kms_request_str.o kms/sort.o
+	kms/kms_encrypt_request.o kms/kms_port.o kms/kms_request_str.o kms/sort.o \
+	kms/kms_kmip_response_parser.o
 
 STATLIB = mongoc/libstatmongoc.a
 

src/bson/bcon.c

@@ -22,7 +22,7 @@
 #include <stdio.h>
 
 #include "bcon.h"
-#include "bson-config.h"
+#include <bson/bson-config.h>
 
 /* These stack manipulation macros are used to manage append recursion in
  * bcon_append_ctx_va().  They take care of some awkward dereference rules (the

src/bson/bcon.h

@@ -3,7 +3,7 @@
  * @brief BCON (BSON C Object Notation) Declarations
  */
 
-#include "bson-prelude.h"
+#include <bson/bson-prelude.h>
 
 /*    Copyright 2009-2013 MongoDB, Inc.
  *

src/bson/bson-atomic.c

@@ -15,7 +15,7 @@
  */
 
 
-#include "bson-atomic.h"
+#include <bson/bson-atomic.h>
 
 #ifdef BSON_OS_UNIX
 /* For sched_yield() */
@@ -25,7 +25,9 @@
 int32_t
 bson_atomic_int_add (volatile int32_t *p, int32_t n)
 {
-   return n + bson_atomic_int32_fetch_add (p, n, bson_memory_order_seq_cst);
+   return n + bson_atomic_int32_fetch_add ((DECL_ATOMIC_INTEGRAL_INT32 *) p,
+                                           n,
+                                           bson_memory_order_seq_cst);
 }
 
 int64_t

src/bson/bson-atomic.h

@@ -14,16 +14,16 @@
  * limitations under the License.
  */
 
-#include "bson-prelude.h"
+#include <bson/bson-prelude.h>
 
 
 #ifndef BSON_ATOMIC_H
 #define BSON_ATOMIC_H
 
 
-#include "bson-config.h"
-#include "bson-compat.h"
-#include "bson-macros.h"
+#include <bson/bson-config.h>
+#include <bson/bson-compat.h>
+#include <bson/bson-macros.h>
 
 #ifdef _MSC_VER
 #include <intrin.h>
@@ -47,7 +47,8 @@ enum bson_memory_order {
 #define MSVC_MEMORDER_SUFFIX(X)
 #endif
 
-#if defined(USE_LEGACY_GCC_ATOMICS) || (!defined(__clang__) && __GNUC__ == 4)
+#if defined(USE_LEGACY_GCC_ATOMICS) || \
+   (!defined(__clang__) && __GNUC__ == 4) || defined(__xlC__)
 #define BSON_USE_LEGACY_GCC_ATOMICS
 #else
 #undef BSON_USE_LEGACY_GCC_ATOMICS
@@ -61,6 +62,7 @@ enum bson_memory_order {
 #ifdef BSON_USE_LEGACY_GCC_ATOMICS
 #undef BSON_IF_GNU_LIKE
 #define BSON_IF_GNU_LIKE(...)
+#define BSON_IF_MSVC(...)
 #define BSON_IF_GNU_LEGACY_ATOMICS(...) __VA_ARGS__
 #else
 #define BSON_IF_GNU_LEGACY_ATOMICS(...)
@@ -379,6 +381,10 @@ DECL_ATOMIC_INTEGRAL (int, int, )
 #endif
 #endif
 
+#ifndef DECL_ATOMIC_INTEGRAL_INT32
+#define DECL_ATOMIC_INTEGRAL_INT32 int32_t
+#endif
+
 BSON_EXPORT (int64_t)
 _bson_emul_atomic_int64_fetch_add (int64_t volatile *val,
                                    int64_t v,

src/bson/bson-clock.c

@@ -14,26 +14,16 @@
  * limitations under the License.
  */
 
-
-#ifdef __APPLE__
-#include <mach/clock.h>
-#include <mach/mach.h>
-#include <mach/mach_time.h>
-#include <sys/time.h>
-#endif
-
-
-#include "bson-config.h"
-#include "bson-compat.h"
+#include <bson/bson-config.h>
+#include <bson/bson-compat.h>
 
 
 #if defined(BSON_HAVE_CLOCK_GETTIME)
 #include <time.h>
 #include <sys/time.h>
 #endif
 
-#include "bson-clock.h"
-
+#include <bson/bson-clock.h>
 
 /*
  *--------------------------------------------------------------------------
@@ -125,19 +115,6 @@ bson_get_monotonic_time (void)
     * int64_t to avoid truncation. */
    clock_gettime (CLOCK_MONOTONIC, &ts);
    return (((int64_t) ts.tv_sec * 1000000) + (ts.tv_nsec / 1000));
-#elif defined(__APPLE__)
-   static mach_timebase_info_data_t info = {0};
-   static double ratio = 0.0;
-
-   if (!info.denom) {
-      /* the value from mach_absolute_time () * info.numer / info.denom
-       * is in nano seconds. So we have to divid by 1000.0 to get micro
-       * seconds*/
-      mach_timebase_info (&info);
-      ratio = (double) info.numer / (double) info.denom / 1000.0;
-   }
-
-   return mach_absolute_time () * ratio;
 #elif defined(_WIN32)
    /* Despite it's name, this is in milliseconds! */
    int64_t ticks = GetTickCount64 ();

src/bson/bson-clock.h

@@ -14,16 +14,16 @@
  * limitations under the License.
  */
 
-#include "bson-prelude.h"
+#include <bson/bson-prelude.h>
 
 
 #ifndef BSON_CLOCK_H
 #define BSON_CLOCK_H
 
 
-#include "bson-compat.h"
-#include "bson-macros.h"
-#include "bson-types.h"
+#include <bson/bson-compat.h>
+#include <bson/bson-macros.h>
+#include <bson/bson-types.h>
 
 
 BSON_BEGIN_DECLS

src/bson/bson-cmp.h

@@ -14,15 +14,15 @@
  * limitations under the License.
  */
 
-#include "bson-prelude.h"
+#include <bson/bson-prelude.h>
 
 
 #ifndef BSON_CMP_H
 #define BSON_CMP_H
 
 
-#include "bson-compat.h" /* ssize_t */
-#include "bson-macros.h" /* BSON_CONCAT */
+#include <bson/bson-compat.h> /* ssize_t */
+#include <bson/bson-macros.h> /* BSON_CONCAT */
 
 #include <limits.h>
 #include <stdbool.h>