Merge pull request #7 from jaydu1/JacobDev

Jacob dev

.gitignore

@@ -1,9 +1,12 @@
 __pycache__/
+VITAE/__pycache__
+VITAE/__pycache__/
 .ipynb_checkpoints
 PyPI/
 data/mouse_brain_merged.h5
 data/mouse_brain_miller.h5
 data/mouse_brain.h5
 code.txt
 update.py
-update.bash
+update.bash
+VITAE/.idea/workspace.xml

VITAE/__init__.py

@@ -1,12 +1,13 @@
-__all__ = ['VITAE']
-
-from VITAE.VITAE import VITAE, get_embedding, get_igraph, leidenalg_igraph, plot_clusters, load_data
-
-__author__ = "Jin-Hong Du, Ming Gao, and Jingshu Wang"
-__copyright__ = "Copyright 2020, The Trajectory Inference Project"
-
-__license__ = "MIT"
-__version__ = "1.1.7"
-__maintainer__ = "Jin-Hong Du"
-__email__ = "dujinhong@uchicago.edu"
-__status__ = "Development"
+__all__ = ['VITAE']
+
+from VITAE.VITAE import VITAE
+from VITAE.utils import load_data
+
+__author__ = "Jin-Hong Du, Tianyu Chen, Ming Gao, and Jingshu Wang"
+__copyright__ = "Copyright 2020, The Trajectory Inference Project"
+
+__license__ = "MIT"
+__version__ = "2.0.1"
+__maintainer__ = "Jin-Hong Du, Tianyu Chen, and Jingshu Wang"
+__email__ = "jinhongd@andrew.cmu.edu"
+__status__ = "Development"