FIX installation #72
Workflow file for this run
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| name: Run tests | |
| on: [push, pull_request] | |
| jobs: | |
| tests: | |
| name: linux-cp${{ matrix.python-version }}-${{ matrix.OPTIONS_NAME }} | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| python-version: [3.7, 3.8, 3.9] | |
| PIP_FLAGS: [""] | |
| MINIMUM_REQUIREMENTS: [0] | |
| include: | |
| - platform_id: manylinux_x86_64 | |
| python-version: 3.7 | |
| MINIMUM_REQUIREMENTS: 1 | |
| OPTIONS_NAME: "min" | |
| - platform_id: manylinux_x86_64 | |
| python-version: 3.9 | |
| PIP_FLAGS: "--pre" | |
| # test pre-releases | |
| OPTIONS_NAME: "pre" | |
| steps: | |
| - name: Checkout 🛎️ | |
| uses: actions/checkout@v2 | |
| with: | |
| persist-credentials: false | |
| - name: Setup Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version}} | |
| - name: Installation of the package | |
| shell: bash -l {0} | |
| run: | | |
| set -ex | |
| source .github/workflows/before_install.sh | |
| set -ex | |
| make install | |
| - name: Run the tests | |
| shell: bash -l {0} | |
| run: | | |
| source .github/workflows/test_script.sh | |
| # Now, run the HiC-pro example with the corresponding tests. | |
| pushd examples/HiC-pro | |
| bash launch_tests.sh | |
| popd | |
| - name: Build the documentation | |
| shell: bash -l {0} | |
| run: | | |
| pip install -r requirements/docs.txt | |
| pushd doc | |
| # FIXME let's give up on warnings for now | |
| make html # SPHINXOPTS="-W" | |
| touch _build/html/.nojekyll |