import ordering

planemo/autopygen/argument_parser_conversion.py

@@ -8,12 +8,28 @@
 import math
 import re
 import uuid
-
-from typing import Optional, Set, List, Dict, Tuple, Union, Any
 from argparse import ArgumentParser
+from typing import (
+    Any,
+    Dict,
+    List,
+    Optional,
+    Set,
+    Tuple,
+    Union,
+)
+
+from lxml import etree
 
-from planemo.autopygen.commands.command_utils import transform_param_info, create_element_with_body
-from planemo.autopygen.param_info import ParamInfo, ParamTypeFlags, ParamDataType
+from planemo.autopygen.commands.command_utils import (
+    create_element_with_body,
+    transform_param_info,
+)
+from planemo.autopygen.param_info import (
+    ParamDataType,
+    ParamInfo,
+    ParamTypeFlags,
+)
 from planemo.autopygen.source_file_parsing.decoy_parser import DecoyParser
 from planemo.autopygen.source_file_parsing.local_module_parsing import handle_local_module_names
 from planemo.autopygen.source_file_parsing.parser_discovery_and_init import get_parser_init_and_actions
@@ -23,8 +39,12 @@
 )
 from planemo.autopygen.source_file_parsing.parsing_exceptions import ArgumentParsingDiscoveryError
 from planemo.autopygen.source_file_parsing.unknown_names_discovery import initialize_variables_in_module
-from planemo.autopygen.xml.xml_utils import repeat, options, param, formatted_xml_elem
-from lxml import etree
+from planemo.autopygen.xml.xml_utils import (
+    formatted_xml_elem,
+    options,
+    param,
+    repeat,
+)
 
 DEFAULT_XML_INDENT = 4
 

planemo/autopygen/commands/command_utils.py

@@ -11,7 +11,10 @@
 """
 from typing import List
 
-from planemo.autopygen.param_info import ParamInfo, ParamDataType
+from planemo.autopygen.param_info import (
+    ParamDataType,
+    ParamInfo,
+)
 
 SPACE = " "
 DEFAULT_INDENT = 4

planemo/autopygen/param_info.py

@@ -1,6 +1,12 @@
 import dataclasses
 import enum
-from typing import Any, List, Union, Optional, Dict
+from typing import (
+    Any,
+    Dict,
+    List,
+    Optional,
+    Union,
+)
 
 from planemo.autopygen.source_file_parsing.constants import WARNING_STRING
 

planemo/autopygen/source_file_parsing/local_module_parsing.py

@@ -3,8 +3,13 @@
 used in argument parser
 """
 import ast
-from typing import List, Tuple, Any, Set
 import logging
+from typing import (
+    Any,
+    List,
+    Set,
+    Tuple,
+)
 
 from planemo.autopygen.source_file_parsing.constants import WARNING_STRING
 from planemo.autopygen.source_file_parsing.parsing_commons import add_parents

planemo/autopygen/source_file_parsing/parser_discovery_and_init.py

@@ -17,11 +17,11 @@
     CustomParserUnavailableException,
     obtain_class_def,
 )
+from .parsing_commons import Discovery
 from .parsing_exceptions import (
     ArgParseImportNotFound,
     ArgParserNotUsed,
 )
-from .parsing_commons import Discovery
 
 ARGPARSE_MODULE_NAME = "argparse"
 ARGUMENT_PARSER_CLASS_NAME = "ArgumentParser"

planemo/autopygen/source_file_parsing/parsing_commons.py

@@ -1,9 +1,13 @@
 """
 Module containing the parent class of Dicovery classes
 """
-import ast
 import abc
-from typing import List, Tuple, Any
+import ast
+from typing import (
+    Any,
+    List,
+    Tuple,
+)
 
 
 class CustomAST(ast.AST):

planemo/autopygen/source_file_parsing/unknown_names_discovery.py

@@ -3,11 +3,16 @@
 (assignments to variables) that have not been extracted yet
 """
 import ast
+import builtins
+from typing import (
+    Any,
+    List,
+    Set,
+    Tuple,
+)
 
 from .constants import STD_LIB_MODULE_NAMES
 from .parsing_commons import CustomVisitor
-from typing import Tuple, List, Any, Set
-import builtins
 
 
 class UnknownNamesDiscovery(CustomVisitor):

planemo/autopygen/xml/xml_utils.py

@@ -1,6 +1,14 @@
-from typing import Optional, List
+from typing import (
+    List,
+    Optional,
+)
+
 from lxml import etree
-from planemo.autopygen.param_info import ParamInfo, ParamDataType
+
+from planemo.autopygen.param_info import (
+    ParamDataType,
+    ParamInfo,
+)
 
 
 def options(param_info: ParamInfo) -> etree._Element:

tests/data/autopygen/autopygen_parser_extraction_test_data.py

@@ -1,13 +1,10 @@
 def import_discovery():
-    import sys  # noqa: F401, F841
-
+    import argparse as parser  # noqa: F401, F841
     import os  # noqa: F401, F841
-
-    import shoud_not_be_imported as snbi  # noqa: F401, F841
-
+    import sys  # noqa: F401, F841
     from os import path as asd  # noqa: F401, F841
 
-    import argparse as parser  # noqa: F401, F841
+    import shoud_not_be_imported as snbi  # noqa: F401, F841
 
 
 def parser_discovery_and_replacement():

tests/test_add_argument_actions_autopygen.py

@@ -1,18 +1,27 @@
 import ast
 import os
-from typing import Tuple, Optional, Dict, Set
 import sys
+from typing import (
+    Dict,
+    Optional,
+    Set,
+    Tuple,
+)
 
 import pytest
 
 from planemo.autopygen.argument_parser_conversion import (
     command_from_decoy,
-    xml_from_decoy,
     obtain_parser,
+    xml_from_decoy,
     xml_to_string,
 )
 from planemo.autopygen.param_info import ParamInfo
-from tests.test_utils import load_function_body, TEST_AUTOPYGEN_DATA, assert_equal
+from tests.test_utils import (
+    assert_equal,
+    load_function_body,
+    TEST_AUTOPYGEN_DATA,
+)
 
 
 def test_no_action_positional():

tests/test_autopygen_parser_discovery.py

@@ -3,12 +3,16 @@
 
 from planemo.autopygen.source_file_parsing.decoy_parser import obtain_class_def
 from planemo.autopygen.source_file_parsing.parser_discovery_and_init import (
-    SimpleParserDiscoveryAndReplacement,
-    ImportDiscovery,
-    GroupAndSubparsersDiscovery,
     ArgumentCreationDiscovery,
+    GroupAndSubparsersDiscovery,
+    ImportDiscovery,
+    SimpleParserDiscoveryAndReplacement,
+)
+from .test_utils import (
+    assert_equal,
+    load_function_body,
+    TEST_AUTOPYGEN_DATA,
 )
-from .test_utils import assert_equal, TEST_AUTOPYGEN_DATA, load_function_body
 
 
 def test_import_discovery():