Skip to content

Issues: freebayes/freebayes

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

44 Open 642 Closed
44 Open 642 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

question on using --bam-list
#810 opened Aug 19, 2024 by goeckeritz
Statically linked binary for freebayes 1.3.8 are missing bug
#809 opened Aug 16, 2024 by marc-sturm
Compressed bgzip reference file
#808 opened Aug 1, 2024 by aghozlane
In/Del variants missed by Freebayes 1.3.8
#807 opened Jul 4, 2024 by h836472
4
Failed to clone 'contrib/multichoose' a second time, aborting bug
#806 opened Jun 28, 2024 by konopinski
2
Can't access mailing group - banned content bug
#805 opened Jun 21, 2024 by mcjmigdal
Two adjacent SNPs reported rather then a MNP? bug
#804 opened Jun 17, 2024 by Jesspalmer92
Freebayes 1.3.8 does not build bug
#803 opened Jun 13, 2024 by feghalya
FreeBayes in Nanopore data
#801 opened Jun 4, 2024 by pabloangulo7
Incongruencies in GT assignment bug
#793 opened Apr 4, 2024 by Virginia-b
1
frequency of each variant per sample
#792 opened Apr 3, 2024 by emilydolivo97
4
Multiple bases returned instead of SNPs in one of the two replicates bug
#787 opened Mar 25, 2024 by NitKV
freebayes did not report variants with AC < 4? bug
#785 opened Mar 11, 2024 by yzliu01
Very high QUAL values
#782 opened Feb 8, 2024 by mbhall88
2
Inexplicably low DP values bug
#781 opened Jan 31, 2024 by jpalmer37
2
Actual full name arguments for -iXU don't seem to match --help bug
#778 opened Dec 5, 2023 by G3N0M3
freebayes does not work with low values of --min-alternate-fraction 0 bug
#777 opened Nov 6, 2023 by friburgo-moc
BA.2.86 SRR25750759 ins21608 call surprisingly dependent --min-alternate-fraction parameter bug
#775 opened Sep 6, 2023 by krobison13
2
Aborted (core dumped) bug
#771 opened Jun 12, 2023 by suhuanhou
genotype calling are not consistent with RO and AO number bug
#768 opened May 17, 2023 by suncpark
1
ARM NEON build fails: undefined reference to rans_compress_O0_32x16_neon in bundled htslib bug
#767 opened Apr 26, 2023 by buildmaster0
3
Error: signal 11: when using parallel --targets bug
#764 opened Feb 9, 2023 by mlarjim
5
Freebayes occasionally incorrectly genotyping large deletions bug
#763 opened Jan 23, 2023 by Coryza
1
Bug in homopolymer LeftAlignment preventing intended insertion shift bug
#761 opened Nov 23, 2022 by mihalykoandras
Unexpected behaviour for --min-base-quality parameter bug
#758 opened Nov 15, 2022 by GorgonVZ
ProTip! Follow long discussions with comments:>50.