Polymorphic-interspecies-SVs

Scripts used for the publication: XXXXX

Tools/Programs

bwa mem
samtools
bcftools
bioawk
plink1.9
pcangsd
GNU parallel
WhatsHap
ShapeIT
EDTA
RepeatMasker
BRAKER2
Juicer
3D-DNA
mummer
SyRI
Paragraph
R

• tidyverse
• ggplot2

Python3

• pandas
• seaborn
• matplotlib
• scipy
• statsmodels