Comparison for Ribotagger against other softwares

For each of the methods:

1. Ribotagger
2. RiboFrame
3. SSUsearch

We ran the benchmark inside an isolated docker container in a Ubuntu 16.04 environment. The Dockerfiles can be found under script/dockerFiles/<name of method>/Dockerfile together with the necessary miscellaneous scripts.

script/dockerFiles/
|-- riboFrame
|   |-- Dockerfile
|   `-- run.sh
|-- ribotagger
|   |-- Dockerfile
|   |-- convert2dna.pl
|   |-- silva.dict.sh
|   `-- silva.pl
`-- ssusearch
    |-- Dockerfile
        `-- runTest.sh

To learn how to run Docker please refer to this link