PyMEGABASE

Overview

PyMEGABASE (PYMB) is Python library for calling subcompartment annotations based on 1D epigenetic tracks.

Resources

Tutorial prediction of human and mouse cell types: <https://colab.research.google.com/drive/1U5ZNTg8A6tMNsIyHJV7zDFSUThisTH3F?usp=sharing>

Citation

TBD.

Installation

The PyMEGABASE library can be installed via pip.

• pip install -i https://test.pypi.org/pypi/ --extra-index-url https://pypi.org/simple PyMEGABASE==1.0.13

You may need to install pyBigWig (pip install pyBigWig) before installing PyMEGABASE

The following are libraries required for installing PyMEGABASE:

• 'numpy'
• 'glob2>=0.7'
• 'requests'
• 'pytest-shutil>=1.7.0'
• 'pyBigWig>=0.3.18'
• 'urllib3>=1.26.14'
• 'tqdm>=4.64.1'
• 'joblib>=1.2.0'
• 'pydca>=1.23'
• 'ipywidgets>=8.0.4'