{bio}[GCCcore/13.3.0] nf-core v2.14.1, pydantic v2.9.1, pyfaidx v0.8.1.2

easybuild/easyconfigs/n/nf-core/nf-core-2.14.1-foss-2024a.eb

@@ -0,0 +1,76 @@
+easyblock = 'PythonBundle'
+
+name = 'nf-core'
+version = '2.14.1'
+
+homepage = 'https://github.com/nf-core/tools'
+description = "Python package with helper tools for the nf-core community."
+
+toolchain = {'name': 'foss', 'version': '2024a'}
+
+builddependencies = [
+    ('poetry', '1.8.3'),
+    ('PDM', '2.18.2'),
+]
+dependencies = [
+    ('Python', '3.12.3'),
+    ('Python-bundle-PyPI', '2024.06'),
+    ('SciPy-bundle', '2024.05'),
+    ('GitPython', '3.1.43'),
+    ('Markdown', '3.7'),
+    ('Pillow', '10.4.0'),
+    ('prompt-toolkit', '3.0.36'),
+    ('pydantic', '2.9.1'),
+    ('pyfaidx', '0.8.1.2'),
+    ('pytest-workflow', '2.1.0'),
+    ('PyYAML', '6.0.2'),
+    ('tqdm', '4.66.5'),
+]
+
+sanity_pip_check = True
+use_pip = True
+
+exts_list = [
+    ('humanfriendly', '10.0', {'checksums': ['6b0b831ce8f15f7300721aa49829fc4e83921a9a301cc7f606be6686a2288ddc']}),
+    ('coloredlogs', '15.0.1', {'checksums': ['7c991aa71a4577af2f82600d8f8f3a89f936baeaf9b50a9c197da014e5bf16b0']}),
+    ('typer', '0.12.5', {'checksums': ['f592f089bedcc8ec1b974125d64851029c3b1af145f04aca64d69410f0c9b722']}),
+    ('pephubclient', '0.4.4', {'checksums': ['0723b84f165024a08885057b80daa314987474ac6be04cb34e4b0611e7b91561']}),
+    ('peppy', '0.40.6', {'checksums': ['a872bf22da2ac9d2e60ea01fdac5a092618957e937d5620f8ba8cd8e552509fb']}),
+    ('eido', '0.2.3', {'checksums': ['c4e5cb2c8c4d7ae1812afbeafde0737c24cfdee21b22d45af5967c7b6848b565']}),
+    ('attmap', '0.13.2', {'checksums': ['fdffa45f8671c13428eb8c3a1702bfdd1123badb99f7af14d72ad53cc7e770de']}),
+    ('oyaml', '1.0', {'checksums': ['ed8fc096811f4763e1907dce29c35895d6d5936c4d0400fe843a91133d4744ed']}),
+    ('cattrs', '24.1.1', {'checksums': ['16e94a13f9aaf6438bd5be5df521e072b1b00481b4cf807bcb1acbd49f814c08']}),
+    ('yacman', '0.9.3', {'checksums': ['91f29ecad7abf32425be034619bd5b00a50fe2be23447b1827c34e1fd68c055d']}),
+    ('pipestat', '0.10.2', {'checksums': ['274cd7ddf44b1750fce854953c4b8d5cde36a23cb73597136442d05bc5a9acaa']}),
+    ('ubiquerg', '0.8.0', {'checksums': ['3dd8e817c736e45c563bbf9e0d9b252e2a0456729c5644203376a447ffc7e04f']}),
+    ('cfgv', '3.4.0', {'checksums': ['e52591d4c5f5dead8e0f673fb16db7949d2cfb3f7da4582893288f0ded8fe560']}),
+    ('nodeenv', '1.9.1', {'checksums': ['6ec12890a2dab7946721edbfbcd91f3319c6ccc9aec47be7c7e6b7011ee6645f']}),
+    ('logmuse', '0.2.8', {'checksums': ['a639d795f33d6876766033dea3c4ceb51617029e5f6e0aa390e7c4bc3012624d']}),
+    ('textual', '0.79.1', {'checksums': ['2aaa9778beac5e56957794ee492bd8d281d39516ccb0e507e726484a1327d8b2']}),
+    ('refgenconf', '0.12.2', {'checksums': ['6c9f9ecd8b91b4f75a535cfbdbdfb136f2dc9e9864142d07aa0352c61cf0cf78']}),
+    ('piper', '0.14.2', {
+        'modulename': 'pypiper',
+        'checksums': ['fff74a6e7cbf188a3ce023913a9ce63098e7c3acfa73833fd9e4c4096a578035'],
+    }),
+    ('url-normalize', '1.4.3', {'checksums': ['d23d3a070ac52a67b83a1c59a0e68f8608d1cd538783b401bc9de2c0fac999b2']}),
+    ('identify', '2.6.0', {'checksums': ['cb171c685bdc31bcc4c1734698736a7d5b6c8bf2e0c15117f4d469c8640ae5cf']}),
+    ('questionary', '2.0.1', {'checksums': ['bcce898bf3dbb446ff62830c86c5c6fb9a22a54146f0f5597d3da43b10d8fc8b']}),
+    ('pdiff', '1.1.4', {'checksums': ['9d8f6f8e7ed2ee61aa2f2526106c0047a2bd80eab7d1237f7086139a6e921c45']}),
+    ('filetype', '1.2.0', {'checksums': ['66b56cd6474bf41d8c54660347d37afcc3f7d1970648de365c102ef77548aadb']}),
+    ('requests-cache', '1.2.1', {
+        'source_tmpl': 'requests_cache-%(version)s.tar.gz',
+        'checksums': ['68abc986fdc5b8d0911318fbb5f7c80eebcd4d01bfacc6685ecf8876052511d1'],
+    }),
+    ('trogon', '0.5.0', {'checksums': ['61a57f0f1a38227d90601cd020f46960be8e36947b5e56c6932c2e01ecc5042a']}),
+    ('pre-commit', '3.8.0', {
+        'source_tmpl': 'pre_commit-%(version)s.tar.gz',
+        'checksums': ['8bb6494d4a20423842e198980c9ecf9f96607a07ea29549e180eef9ae80fe7af'],
+    }),
+    ('refgenie', '0.12.1', {'checksums': ['cfd007ed0981e00d019deb49aaea896952341096494165cb8378488850eec451']}),
+    (name, version, {
+        'source_tmpl': 'nf_core-%(version)s.tar.gz',
+        'checksums': ['35bd8d73ecca4eb87443fada31bc7b2562429de3a4bfbf7261db348d14bf54bb'],
+    }),
+]
+
+moduleclass = 'bio'

easybuild/easyconfigs/p/PDM/PDM-2.18.2-GCCcore-13.3.0.eb

@@ -0,0 +1,57 @@
+easyblock = 'PythonBundle'
+
+name = 'PDM'
+version = '2.18.2'
+
+homepage = 'https://pdm-project.org'
+description = "A modern Python package and dependency manager supporting the latest PEP standards."
+
+toolchain = {'name': 'GCCcore', 'version': '13.3.0'}
+
+builddependencies = [
+    ('binutils', '2.42'),
+    ('poetry', '1.8.3'),
+]
+dependencies = [
+    ('Python', '3.12.3'),
+    ('Python-bundle-PyPI', '2024.06'),
+]
+
+sanity_pip_check = True
+use_pip = True
+
+exts_list = [
+    ('pdm_backend', '2.3.3', {
+        'modulename': 'pdm.backend',
+        'checksums': ['a8616f628ec84353d7a0ba86b228dcf01bab5debc9e4d1a29e5311a52425d594'],
+    }),
+    ('installer', '0.7.0', {'checksums': ['a26d3e3116289bb08216e0d0f7d925fcef0b0194eedfa0c944bcaaa106c4b631']}),
+    ('sniffio', '1.3.1', {'checksums': ['f4324edc670a0f49750a81b895f35c3adb843cca46f0530f79fc1babb23789dc']}),
+    ('h11', '0.14.0', {'checksums': ['8f19fbbe99e72420ff35c00b27a34cb9937e902a8b810e2c88300c6f0a3b699d']}),
+    ('httpcore', '1.0.5', {'checksums': ['34a38e2f9291467ee3b44e89dd52615370e152954ba21721378a87b2960f7a61']}),
+    ('anyio', '4.4.0', {'checksums': ['5aadc6a1bbb7cdb0bede386cac5e2940f5e2ff3aa20277e991cf028e0585ce94']}),
+    ('httpx', '0.27.2', {'checksums': ['f7c2be1d2f3c3c3160d441802406b206c2b76f5947b11115e6df10c6c65e66c2']}),
+    ('unearth', '0.17.2', {'checksums': ['0b8a2afd3476f1ab6155fc579501ac47fffe43547d88a70e5a5b76a7fe6caa2c']}),
+    ('installer', '0.7.0', {'checksums': ['a26d3e3116289bb08216e0d0f7d925fcef0b0194eedfa0c944bcaaa106c4b631']}),
+    ('truststore', '0.9.2', {'checksums': ['a1dee0d0575ff22d2875476343783a5d64575419974e228f3248772613c3d993']}),
+    ('resolvelib', '1.0.1', {'checksums': ['04ce76cbd63fded2078ce224785da6ecd42b9564b1390793f64ddecbe997b309']}),
+    ('python-dotenv', '1.0.1', {
+        'modulename': 'dotenv',
+        'checksums': ['e324ee90a023d808f1959c46bcbc04446a10ced277783dc6ee09987c37ec10ca'],
+    }),
+    ('pyproject_hooks', '1.1.0', {'checksums': ['4b37730834edbd6bd37f26ece6b44802fb1c1ee2ece0e54ddff8bfc06db86965']}),
+    ('pbs-installer', '2024.9.9', {
+        'source_tmpl': 'pbs_installer-%(version)s.tar.gz',
+        'checksums': ['bed162d05ef71c53a0e5e5c6349bab1b07a3d0e5af1800d619a4414a1fda309a'],
+    }),
+    ('hishel', '0.0.30', {'checksums': ['656393ee77e9c39a0d6c527c74810e15d96e598dcb9b191f20a788608ceaca99']}),
+    ('findpython', '0.6.1', {'checksums': ['56e52b409a92bcbd495cf981c85acf137f3b3e51cc769b46eba219bb1ab7533c']}),
+    ('dep-logic', '0.4.6', {
+        'source_tmpl': 'dep_logic-%(version)s.tar.gz',
+        'checksums': ['673d45402e9f11c4e501b08ebaea1efaa5e9bc6f69410684a9e448f8f5b26d6a'],
+    }),
+    ('blinker', '1.8.2', {'checksums': ['8f77b09d3bf7c795e969e9486f39c2c5e9c39d4ee07424be2bc594ece9642d83']}),
+    ('pdm', version, {'checksums': ['6d93a18d52edca056fafed7b262fe48ddc61984dabf73eb9365ad61a90caebb6']}),
+]
+
+moduleclass = 'lib'