Skip to content

bump GHA image

bump GHA image #45

Workflow file for this run

name: build
on: [push, pull_request]
jobs:
build:
runs-on: ubuntu-22.04
strategy:
matrix:
BUILD_TYPE: [Debug, Coverage, Valgrind, Release]
steps:
- name: docker login
uses: docker/login-action@v1
with:
registry: ghcr.io
username: ${{ github.repository_owner }}
password: ${{ secrets.GITHUB_TOKEN }}
- uses: actions/checkout@v2
with:
fetch-depth: 0
- name: deps
run: |
sudo apt-get -qq update
sudo apt-get install -y libjemalloc-dev
- name: docker build
run: |
effective_build_type='${{ matrix.BUILD_TYPE }}'
if [ "$effective_build_type" == "Valgrind" ]; then
effective_build_type="Release"
fi
docker build --no-cache -t glnexus_tests --target builder --build-arg build_type=$effective_build_type .
# copy the /GLnexus folder out of the image to mount for subsequent use
docker run --rm -v /:/io glnexus_tests cp -r /GLnexus/ /io
- name: tests
if: ${{ matrix.BUILD_TYPE != 'Valgrind' }}
run: |
docker run --rm -v /GLnexus:/GLnexus glnexus_tests
sudo chown -R $USER /GLnexus
/GLnexus/test/jemalloc_linking.sh
- name: coverage
if: ${{ matrix.BUILD_TYPE == 'Coverage' }}
env:
COVERALLS_REPO_TOKEN: ${{ secrets.COVERALLS_REPO_TOKEN }}
run: |
sudo pip install -U cpp-coveralls
pushd /GLnexus && coveralls --include src --include include --gcov-options '\-lp' && popd
- name: valgrind
if: ${{ matrix.BUILD_TYPE == 'Valgrind' }}
run: |
docker run --rm -e ROCKSDB_VALGRIND_RUN=1 -v /GLnexus:/GLnexus glnexus_tests bash -ex -o pipefail -c "valgrind --soname-synonyms=somalloc=*jemalloc* --suppressions=test/GLnexus.supp --leak-check=full --gen-suppressions=all --error-exitcode=1 ./unit_tests -d yes"
- name: glnexus_cli
if: ${{ matrix.BUILD_TYPE == 'Release' }}
uses: actions/upload-artifact@v2
with:
name: glnexus_cli
path: /GLnexus/glnexus_cli
- name: ghcr.io/dnanexus-rnd/glnexus
if: ${{ matrix.BUILD_TYPE == 'Release' }}
run: |
dockertag="ghcr.io/dnanexus-rnd/glnexus:$(git describe --tags)"
docker build -t $dockertag .
docker run $dockertag glnexus_cli -h 2>&1 | grep 'detected jemalloc'
docker push $dockertag