Updating the required depth to 2 in config. #43
Workflow file for this run
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| name: build | |
| on: [push, pull_request] | |
| jobs: | |
| build: | |
| runs-on: ubuntu-18.04 | |
| strategy: | |
| matrix: | |
| BUILD_TYPE: [Debug, Coverage, Valgrind, Release] | |
| steps: | |
| - name: docker login | |
| uses: docker/login-action@v1 | |
| with: | |
| registry: ghcr.io | |
| username: ${{ github.repository_owner }} | |
| password: ${{ secrets.GITHUB_TOKEN }} | |
| - uses: actions/checkout@v2 | |
| with: | |
| fetch-depth: 0 | |
| - name: deps | |
| run: | | |
| sudo apt-get -qq update | |
| sudo apt-get install -y libjemalloc-dev | |
| - name: docker build | |
| run: | | |
| effective_build_type='${{ matrix.BUILD_TYPE }}' | |
| if [ "$effective_build_type" == "Valgrind" ]; then | |
| effective_build_type="Release" | |
| fi | |
| docker build --no-cache -t glnexus_tests --target builder --build-arg build_type=$effective_build_type . | |
| # copy the /GLnexus folder out of the image to mount for subsequent use | |
| docker run --rm -v /:/io glnexus_tests cp -r /GLnexus/ /io | |
| - name: tests | |
| if: ${{ matrix.BUILD_TYPE != 'Valgrind' }} | |
| run: | | |
| docker run --rm -v /GLnexus:/GLnexus glnexus_tests | |
| sudo chown -R $USER /GLnexus | |
| /GLnexus/test/jemalloc_linking.sh | |
| - name: coverage | |
| if: ${{ matrix.BUILD_TYPE == 'Coverage' }} | |
| env: | |
| COVERALLS_REPO_TOKEN: ${{ secrets.COVERALLS_REPO_TOKEN }} | |
| run: | | |
| sudo pip install -U cpp-coveralls | |
| pushd /GLnexus && coveralls --include src --include include --gcov-options '\-lp' && popd | |
| - name: valgrind | |
| if: ${{ matrix.BUILD_TYPE == 'Valgrind' }} | |
| run: | | |
| docker run --rm -e ROCKSDB_VALGRIND_RUN=1 -v /GLnexus:/GLnexus glnexus_tests bash -ex -o pipefail -c "valgrind --soname-synonyms=somalloc=*jemalloc* --suppressions=test/GLnexus.supp --leak-check=full --gen-suppressions=all --error-exitcode=1 ./unit_tests -d yes" | |
| - name: glnexus_cli | |
| if: ${{ matrix.BUILD_TYPE == 'Release' }} | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: glnexus_cli | |
| path: /GLnexus/glnexus_cli | |
| - name: ghcr.io/dnanexus-rnd/glnexus | |
| if: ${{ matrix.BUILD_TYPE == 'Release' }} | |
| run: | | |
| dockertag="ghcr.io/dnanexus-rnd/glnexus:$(git describe --tags)" | |
| docker build -t $dockertag . | |
| docker run $dockertag glnexus_cli -h 2>&1 | grep 'detected jemalloc' | |
| docker push $dockertag |