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Pipeline to run SCENIC analysis (pySCENIC)

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Pipeline to run SCENIC analysis (pySCENIC)

Authors: Lucy Garner and Devika Agarwal

Three pipelines that should be run in the order:

  • pipeline_pyscenic.py
  • pipeline_pyscenic_downstream.py
  • pipeline_pyscenic_r.py

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Pipeline to run SCENIC analysis (pySCENIC)

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  • Python 80.4%
  • R 19.6%