Technical documentation

For instructions on using deepTools 2.0 or newer, please go here. This page only applies to deepTools 1.5

deepTools are available as:

• Galaxy tools for web-based analyses
• stand-alone tools for command-line usage

The technical documentation contains information about:

• Installing deepTools
• deepTools options and parameters

If you are particularly interested in the Galaxy incorporation of deepTools, you can check out our public deepTools Galaxy web server at: http://deeptools.ie-freiburg.mpg.de

If you have never used the Galaxy framework before, please have a look at our general (brief) Galaxy introduction.

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For more detailed information about the scope of the individual programs go to WIKI-START > Tools Details:

• deepTools for data quality checks
• deepTools for normalizations
• deepTools for visualizations