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alignmentSieve: Adding the option to keep the original tags in the processed BAM #1255

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This PR:

Adds the argument --keepTags in alignmentSieve.py to keep the original alignment tags in the filtered/shifted/output BAM. This can be useful to distinguish between read pairs from different secondary alignments when sorting after filtering, for example.


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  • Does the PR contain a new feature?
  • Does the PR contain bugfix?
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  • Does the PR contain changes to the galaxy wrapper?

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