hicHyperoptDetectLoops adds chromosome prefix by default

[dawe]

Hello all,
I just found out that hicHyperoptDetectLoops internally adds the flag -cl to hicValidateLocations. While this is not necessarily a bug, if protein file has the same chromosome naming convention than loop file, the entire process won't work as there won't be any overlaps between the two files.

[joachimwolff]

Hi,

Thanks for reporting it, I will consider it in the next HiCExplorer release.

Best,

Joachim