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update student page and rebuild
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@danStich
danStich committed Sep 13, 2023
1 parent da94620 commit d350e05
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164 changes: 76 additions & 88 deletions stich/biol217.html
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<title>Quantitative biology</title>

<script src="site_libs/jquery-1.11.3/jquery.min.js"></script>
<script src="site_libs/header-attrs-2.20/header-attrs.js"></script>
<script src="site_libs/jquery-3.6.0/jquery-3.6.0.min.js"></script>
<meta name="viewport" content="width=device-width, initial-scale=1" />
<link href="site_libs/bootstrap-3.3.5/css/cosmo.min.css" rel="stylesheet" />
<script src="site_libs/bootstrap-3.3.5/js/bootstrap.min.js"></script>
<script src="site_libs/bootstrap-3.3.5/shim/html5shiv.min.js"></script>
<script src="site_libs/bootstrap-3.3.5/shim/respond.min.js"></script>
<style>h1 {font-size: 34px;}
h1.title {font-size: 38px;}
h2 {font-size: 30px;}
h3 {font-size: 24px;}
h4 {font-size: 18px;}
h5 {font-size: 16px;}
h6 {font-size: 12px;}
code {color: inherit; background-color: rgba(0, 0, 0, 0.04);}
pre:not([class]) { background-color: white }</style>
<script src="site_libs/navigation-1.1/tabsets.js"></script>
<script src="site_libs/accessible-code-block-0.0.1/empty-anchor.js"></script>
<link href="site_libs/font-awesome-5.1.0/css/all.css" rel="stylesheet" />
<link href="site_libs/font-awesome-5.1.0/css/v4-shims.css" rel="stylesheet" />
<!DOCTYPE html>
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<meta name="theme-color" content="#382121">
</head>

<style type="text/css">
code{white-space: pre-wrap;}
span.smallcaps{font-variant: small-caps;}
span.underline{text-decoration: underline;}
div.column{display: inline-block; vertical-align: top; width: 50%;}
div.hanging-indent{margin-left: 1.5em; text-indent: -1.5em;}
ul.task-list{list-style: none;}
</style>






<style type="text/css">
h1 {
font-size: 34px;
}
h1.title {
font-size: 38px;
}
h2 {
font-size: 30px;
}
h3 {
font-size: 24px;
}
h4 {
font-size: 18px;
}
h5 {
font-size: 16px;
}
h6 {
font-size: 12px;
}
.table th:not([align]) {
text-align: left;
}
</style>

<link rel="stylesheet" href="styles.css" type="text/css" />

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margin-left: auto;
margin-right: auto;
}
code {
color: inherit;
background-color: rgba(0, 0, 0, 0.04);
}
img {
max-width:100%;
}
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summary {
display: list-item;
}
details > summary > p:only-child {
display: inline;
}
pre code {
padding: 0;
}
</style>


<style type="text/css">
/* padding for bootstrap navbar */
body {
padding-top: 51px;
padding-bottom: 40px;
}
/* offset scroll position for anchor links (for fixed navbar) */
.section h1 {
padding-top: 56px;
margin-top: -56px;
}
.section h2 {
padding-top: 56px;
margin-top: -56px;
}
.section h3 {
padding-top: 56px;
margin-top: -56px;
}
.section h4 {
padding-top: 56px;
margin-top: -56px;
}
.section h5 {
padding-top: 56px;
margin-top: -56px;
}
.section h6 {
padding-top: 56px;
margin-top: -56px;
}
.dropdown-submenu {
position: relative;
}
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margin-right: -10px;
}
.dropdown-submenu:hover>a:after {
border-left-color: #ffffff;
border-left-color: #adb5bd;
}
.dropdown-submenu.pull-left {
float: none;
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}
</style>

<script>
<script type="text/javascript">
// manage active state of menu based on current page
$(document).ready(function () {
// active menu anchor
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href = "index.html";
var menuAnchor = $('a[href="' + href + '"]');

// mark it active
menuAnchor.parent().addClass('active');

// if it's got a parent navbar menu mark it active as well
menuAnchor.closest('li.dropdown').addClass('active');
// mark the anchor link active (and if it's in a dropdown, also mark that active)
var dropdown = menuAnchor.closest('li.dropdown');
if (window.bootstrap) { // Bootstrap 4+
menuAnchor.addClass('active');
dropdown.find('> .dropdown-toggle').addClass('active');
} else { // Bootstrap 3
menuAnchor.parent().addClass('active');
dropdown.addClass('active');
}

// Navbar adjustments
var navHeight = $(".navbar").first().height() + 15;
var style = document.createElement('style');
var pt = "padding-top: " + navHeight + "px; ";
var mt = "margin-top: -" + navHeight + "px; ";
var css = "";
// offset scroll position for anchor links (for fixed navbar)
for (var i = 1; i <= 6; i++) {
css += ".section h" + i + "{ " + pt + mt + "}\n";
}
style.innerHTML = "body {" + pt + "padding-bottom: 40px; }\n" + css;
document.head.appendChild(style);
});
</script>

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max-height: 500px;
min-height: 44px;
overflow-y: auto;
background: white;
border: 1px solid #ddd;
border-radius: 4px;
}

.tabset-dropdown > .nav-tabs > li.active:before {
content: "";
.tabset-dropdown > .nav-tabs > li.active:before, .tabset-dropdown > .nav-tabs.nav-tabs-open:before {
content: "\e259";
font-family: 'Glyphicons Halflings';
display: inline-block;
padding: 10px;
border-right: 1px solid #ddd;
}

.tabset-dropdown > .nav-tabs.nav-tabs-open > li.active:before {
content: "&#xe258;";
border: none;
}

.tabset-dropdown > .nav-tabs.nav-tabs-open:before {
content: "";
content: "\e258";
font-family: 'Glyphicons Halflings';
display: inline-block;
padding: 10px;
border-right: 1px solid #ddd;
border: none;
}

.tabset-dropdown > .nav-tabs > li.active {
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<div class="navbar navbar-default navbar-fixed-top" role="navigation">
<div class="container">
<div class="navbar-header">
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-bs-toggle="collapse" data-target="#navbar" data-bs-target="#navbar">
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
Expand All @@ -278,7 +253,7 @@
</a>
</li>
<li class="dropdown">
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" aria-expanded="false">
<a href="#" class="dropdown-toggle" data-toggle="dropdown" role="button" data-bs-toggle="dropdown" aria-expanded="false">
Teaching

<span class="caret"></span>
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</div><!--/.container -->
</div><!--/.navbar -->

<div class="fluid-row" id="header">
<div id="header">



Expand All @@ -337,9 +312,22 @@ <h1 class="title toc-ignore">Quantitative biology</h1>

<p><img id="multi" src="images/crabs.jpg" alt=""></p>
<h3 id="multi">
Looking for the <a href="classes/BIOL217/index.html"> course website</a>?
Looking for the <a href="classes/BIOL217/index.html"> course
website</a>?
</h3>
<p>This course is designed to help undergraduates construct a basic framework of knowledge that will provide a foundation for further learning about quantitative reasoning in the sciences. Upon successful completion of this course, students will have developed i) technical skills and the capacity for quantitative reasoning that are fundamental to modern data analysis, ii) an understanding of why and how specific methods are implemented in research, iv) the ability to interpret and communicate the results of commonly applied quantitative tools, and iv) a cognitive framework for critically evaluating experimental design and data analyses encountered in professional and everyday life. Topics range from science philosophy to linear models and extensions thereof, to non-parametric statistics, multivariate analyses, machine learning, and Bayesian estimation.</p>
<p>This course is designed to help undergraduates construct a basic
framework of knowledge that will provide a foundation for further
learning about quantitative reasoning in the sciences. Upon successful
completion of this course, students will have developed i) technical
skills and the capacity for quantitative reasoning that are fundamental
to modern data analysis, ii) an understanding of why and how specific
methods are implemented in research, iv) the ability to interpret and
communicate the results of commonly applied quantitative tools, and iv)
a cognitive framework for critically evaluating experimental design and
data analyses encountered in professional and everyday life. Topics
range from science philosophy to linear models and extensions thereof,
to non-parametric statistics, multivariate analyses, machine learning,
and Bayesian estimation.</p>

<!DOCTYPE html>

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// add bootstrap table styles to pandoc tables
function bootstrapStylePandocTables() {
$('tr.header').parent('thead').parent('table').addClass('table table-condensed');
$('tr.odd').parent('tbody').parent('table').addClass('table table-condensed');
}
$(document).ready(function () {
bootstrapStylePandocTables();
Expand All @@ -375,7 +363,7 @@ <h3 id="multi">

$(document).ready(function () {
$('.tabset-dropdown > .nav-tabs > li').click(function () {
$(this).parent().toggleClass('nav-tabs-open')
$(this).parent().toggleClass('nav-tabs-open');
});
});
</script>
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