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@chan-csu

Chan Lab at Colorado State University

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  1. NECom-FShaP NECom-FShaP Public

    MATLAB

  2. spatialGut spatialGut Public

    spatialGut: simulating the longitudinally and radially varying gut microbiota composition

    MATLAB 1

  3. SteadyCom SteadyCom Public

    Computing the maximum growth rate of a microbial community at community steady-state

    MATLAB 1

Repositories

Showing 10 of 21 repositories
  • ADToolbox Public

    AD Toolbox: A python package for modeling and optimization on anaerobic digestion process

    chan-csu/ADToolbox’s past year of commit activity
    HTML 1 1 0 0 Updated Sep 19, 2024
  • SPAM-DFBA Public

    Formal repository for "Microbial Interactions from a New Perspective: Reinforcement Learning Reveals New Insights into Microbiome Evolution"

    chan-csu/SPAM-DFBA’s past year of commit activity
    HTML 4 4 0 0 Updated Sep 4, 2024
  • RCJ_Megtagenomics Public

    A New Repository for RCE Metagenomics Project

    chan-csu/RCJ_Megtagenomics’s past year of commit activity
    HTML 0 0 0 0 Updated Apr 27, 2023
  • inhouseCobraFunctions Public

    Some in-house matlab functions compatible with the COBRA toolbox

    chan-csu/inhouseCobraFunctions’s past year of commit activity
    MATLAB 0 0 1 0 Updated Mar 14, 2023
  • OptForce_Bdoh Public

    A repository for bdoh over production work

    chan-csu/OptForce_Bdoh’s past year of commit activity
    MATLAB 2 0 1 0 Updated Mar 3, 2022
  • PyADM1 Public Forked from CaptainFerMag/PyADM1

    PyADM1: a Python implementation of Anaerobic Digestion Model number 1

    chan-csu/PyADM1’s past year of commit activity
    Python 1 MIT 22 0 0 Updated Jul 13, 2021
  • spades Public Forked from ablab/spades

    SPAdes Genome Assembler

    chan-csu/spades’s past year of commit activity
    C++ 0 135 0 0 Updated Mar 11, 2021
  • nextflow_sourmash Public Forked from HadrienG/nextflow_sourmash
    chan-csu/nextflow_sourmash’s past year of commit activity
    Groovy 0 GPL-3.0 4 0 0 Updated Feb 18, 2021
  • YAMP Public Forked from alesssia/YAMP

    YAMP: Yet Another Metagenomic Pipeline

    chan-csu/YAMP’s past year of commit activity
    Nextflow 0 GPL-3.0 28 0 0 Updated Feb 10, 2021
  • mag Public Forked from nf-core/mag

    Assembly and binning of metagenomes

    chan-csu/mag’s past year of commit activity
    Nextflow 0 MIT 108 0 0 Updated Feb 10, 2021
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