dcm2bidsphysio.py localvariable 'physio_label' referenced before assignment

[benjamin-zimmerman]

I tried using the docker container latest and v4.2 with command:

physio2bidsphysio --infile <sourcedata.dcm> --bidsprefix <bidsfolder/siemensCMRR_bold.nii.gz> --verbose

with output:

After Parsing waveform 0 (PULS), 1 (RESP), and 2 (EXT).

[pvelasco]

Thanks for reporting this issue.
GitHub automatically closed this issue, but the new Docker image is not ready yet. It will be shortly.

[pvelasco]

@benjamin-zimmerman,
Can you please try with the latest (as of today) docker image?

docker pull cbinyu/bidsphysio:v4.3.1

Thanks!

[benjamin-zimmerman]

Thanks for responding to this issue! I'm getting a new error now, which prevents me from seeing if this error is resolved.

The error is "dcm2bids( ) got multiple values for argument 'verbose'. This occurs whether or not I use the verbose flag.

Let me know if you'd prefer for me to open a new issue instead of putting this here.

[pvelasco]

@benjamin-zimmerman,
Thanks for catching this new bug. I think I have fixed it. Do you mind trying with the new Docker image?

docker pull cbinyu/bidsphysio:v4.3.2

[benjamin-zimmerman]

I'm still receiving the same error (multiple values for argument 'verbose') with bidsphysio:v4.3.2. :

[pvelasco]

For some reason Docker didn't install the newest versions of the packages. I modified the Dockerfile to fix it.
Do you mind trying it again? Remove the previous one and pull it again:

docker rmi cbinyu/bidsphysio:v4.3.2
docker pull cbinyu/bidsphysio:v4.3.2

[benjamin-zimmerman]

Thanks, now I am getting a new error:

again after parsing waveform 0, 1, and 2.

Please let me know if this could be an error in my physio .dcm, and I could provide more info.

[pvelasco]

Could you please send me your physio .dcm file so that I take a look?
pablo dot velasco at nyu dot edu

Thanks

[pvelasco]

OK. I think it is fixed now.
You can try with

docker pull cbinyu/bidsphysio:v4.3.3

Thanks a lot for your help.

[benjamin-zimmerman]

Everything appears to work on my end now! Thanks for your help!