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Update Core to 1.0.6 to pull requirements.txt from jar
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haynescd committed Mar 13, 2024
1 parent b675d34 commit 6948d21
Showing 1 changed file with 2 additions and 3 deletions.
5 changes: 2 additions & 3 deletions docker/web-and-data/Dockerfile
Original file line number Diff line number Diff line change
Expand Up @@ -45,15 +45,14 @@ RUN apt-get update; apt-get install -y --no-install-recommends \
RUN mkdir -p /cbioportal

#Download core files
RUN wget https://github.com/cBioPortal/cbioportal-core/releases/download/1.0.5/core-1.0.5.jar -P core/ ; cd core ; jar -xf core-1.0.5.jar scripts/ ; chmod -R a+x scripts/ ; cd ..;
RUN wget https://github.com/cBioPortal/cbioportal-core/releases/download/1.0.6/core-1.0.6.jar -P core/ ; cd core ; jar -xf core-1.0.5.jar scripts/ requirements.txt ; chmod -R a+x scripts/ ; cd ..;


COPY --from=build /cbioportal/src/main/resources/db-scripts /cbioportal/db-scripts
COPY --from=build /cbioportal/requirements.txt /cbioportal/requirements.txt

# install build and runtime dependencies
# ignore update failure980[1298[01 w2308s
RUN pip3 install -r /cbioportal/core/requirements.txt
RUN pip3 install -r /core/requirements.txt

# add importer scripts to PATH for easy running in containers
RUN find /core/scripts/ -type f -executable \! -name '*.pl' -print0 | xargs -0 -- ln -st /usr/local/bin
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