Add k-mer functionality benchmarks

[padix-key]

No description provided.

[codspeed-hq]

CodSpeed Performance Report

Merging #663 will not alter performance

_{Comparing padix-key:benchmark (49117cb) with main (d0107fa)}

Summary

✅ 12 untouched benchmarks

🆕 32 new benchmarks

Benchmarks breakdown

	Benchmark	main	padix-key:benchmark	Change
🆕	benchmark_indexing_from_kmer_selection[11*11*1*1***111-BucketKmerTable(100000)]	N/A	9.8 ms	N/A
🆕	benchmark_indexing_from_kmer_selection[11*11*1*1***111-KmerTable]	N/A	12.9 ms	N/A
🆕	benchmark_indexing_from_kmer_selection[None-BucketKmerTable(100000)]	N/A	9.8 ms	N/A
🆕	benchmark_indexing_from_kmer_selection[None-KmerTable]	N/A	12.8 ms	N/A
🆕	benchmark_indexing_from_kmers[11*11*1*1***111-BucketKmerTable(100000)]	N/A	10.8 ms	N/A
🆕	benchmark_indexing_from_kmers[11*11*1*1***111-KmerTable]	N/A	13.8 ms	N/A
🆕	benchmark_indexing_from_kmers[None-BucketKmerTable(100000)]	N/A	10.7 ms	N/A
🆕	benchmark_indexing_from_kmers[None-KmerTable]	N/A	13.7 ms	N/A
🆕	benchmark_indexing_from_sequences[11*11*1*1***111-BucketKmerTable(100000)]	N/A	14.2 ms	N/A
🆕	benchmark_indexing_from_sequences[11*11*1*1***111-KmerTable]	N/A	17.2 ms	N/A
🆕	benchmark_indexing_from_sequences[None-BucketKmerTable(100000)]	N/A	9.7 ms	N/A
🆕	benchmark_indexing_from_sequences[None-KmerTable]	N/A	12.7 ms	N/A
🆕	benchmark_kmer_decomposition[11*11*1*1***111]	N/A	184.9 µs	N/A
🆕	benchmark_kmer_decomposition[None]	N/A	153.2 µs	N/A
🆕	benchmark_match[BucketKmerTable(10000)-11*11*1*1***111]	N/A	622.6 µs	N/A
🆕	benchmark_match[BucketKmerTable(10000)-None]	N/A	577.8 µs	N/A
🆕	benchmark_match[KmerTable-11*11*1*1***111]	N/A	538.6 µs	N/A
🆕	benchmark_match[KmerTable-None]	N/A	495.4 µs	N/A
🆕	benchmark_match_kmer_selection[BucketKmerTable(10000)-11*11*1*1***111]	N/A	557.5 µs	N/A
🆕	benchmark_match_kmer_selection[BucketKmerTable(10000)-None]	N/A	558.6 µs	N/A
...	...	...	...	...

ℹ️ Only the first 20 benchmarks are displayed. Go to the app to view all benchmarks.