[DATALAD RUNCMD] Rename hplc_recovery_fractions to hplc_recovery_frac…

…tion

=== Do not change lines below ===
{
 "chain": [],
 "cmd": "git-sedi hplc_recovery_fractions hplc_recovery_fraction",
 "exit": 0,
 "extra_inputs": [],
 "inputs": [],
 "outputs": [],
 "pwd": "."
}
^^^ Do not change lines above ^^^

src/schema/objects/columns.yaml

@@ -237,8 +237,8 @@ high_cutoff:
     - type: string
       enum:
         - n/a
-hplc_recovery_fractions:
-  name: hplc_recovery_fractions
+hplc_recovery_fraction:
+  name: hplc_recovery_fraction
   display_name: HPLC recovery fractions
   description: |
     HPLC recovery fractions (the fraction of activity that gets loaded onto the HPLC).

src/schema/objects/metadata.yaml

@@ -2023,7 +2023,7 @@ MetaboliteRecoveryCorrectionApplied:
   description: |
     Metabolite recovery correction from the HPLC, for tracers where it changes
     with time postinjection.
-    If `true`, the `hplc_recovery_fractions` column MUST be present in the
+    If `true`, the `hplc_recovery_fraction` column MUST be present in the
     corresponding `*_blood.tsv` file.
   type: boolean
 MiscChannelCount:

src/schema/rules/tabular_data/pet.yaml

@@ -15,7 +15,7 @@ Blood:
     metabolite_polar_fraction:
       level: optional
       level_addendum: recommended if `MetaboliteAvail` is `true`
-    hplc_recovery_fractions:
+    hplc_recovery_fraction:
       level: optional
       level_addendum: required if `MetaboliteRecoveryCorrectionApplied` is `true`
     whole_blood_radioactivity:
@@ -48,7 +48,7 @@ BloodMetaboliteCorrection:
     - extension == ".tsv"
     - sidecar.MetaboliteRecoveryCorrectionApplied == true
   columns:
-    hplc_recovery_fractions: required
+    hplc_recovery_fraction: required
 
 BloodWholeBlood:
   selectors:

tools/schemacode/bidsschematools/migrations.py

@@ -69,7 +69,7 @@ def migrate_tsv_columns(dataset_path: Path):
     # inheritance principle)
     for col_from, col_to, file_glob in (
         # https://github.com/bids-standard/bids-2-devel/issues/78
-        ("hplc_recovery_fractions", "hplc_recovery_fraction", "*_blood.*"),
+        ("hplc_recovery_fraction", "hplc_recovery_fraction", "*_blood.*"),
         # https://github.com/bids-standard/bids-2-devel/issues/15
         ("units", "unit", "_channels.*"),  # dependency on migrate_participants
         # ??? Any other columns to rename for some reason?