v8.0.2

BugFixes

• [KBDEV-1047] - CIViC loader now updates Statements again
• CIViC loader Molecular Profile parsing bug resolved

v8.0.1

BugFixes

• [KBDEV-1200] - Fix pagination bug in clinicaltrialsgov loader
• [KBDEV-1202] - Update CIViC loader to v2.4 API Schema

v8.0.0

Breaking Change

• [KBDEV-1176, KBDEV-1194] - get updated studies from clinicaltrialsgov API

v7.0.1

Improvement

[KBDEV-1163] - Remove loading refseq in ensembl loader.

v7.0.0

Breaking Changes

• [KBDEV-1158] - clinicaltrial loader now uses api upload instead of file
• [KBDEV-1167] - cancergenomeinterpreter now uses biomarkers file instead of biomarker_per_variant
• [KBDEV-1135] - ncit loader updated to use latest file
• [KBDEV-1139] - ensembl loader updated to use latest file with proteins

New Features

• all_source: New loader to upload all sources

BugFixes

• Snakefile: Fix loading errors
• [KBDEV-1050] - docm: Remap some statements to "recurrent" relevance term
• [KBDEV-1086] - vocabulary ontology data: Link "copy variant" to "mutation" instead of "structural variant"
• ncit: Use preferredName to handle the drugs with different id but the same name
• moa: Handle empty string

Improvements

• [KBDEV-957] - sources: Add ESMO, tso500 and Profile as source
• [KBDEV-1120] - evidenceLevels ontology data: Add more Profile evidenceLevels
• [KBDEV-1084] - vocabulary ontology data: Add "cancer gene"
• Snakefile: Add all_local and all_ontologies

v6.4.0

New Features

• Support for complex (more than one variant) Molecular profiles in Civic loader

v6.3.3

BugFixes

• Fix CIViC loader for API schema change on Molecular Profiles & EvidenceItems type/significance/direction.

v6.3.2

Improvement

• Add evidence level data to the ontology loader to accomodate for cross-referencing with IPR levels
• Add test for ensembl loader uploadfile function

v6.3.1

BugFixes

• Fix CIViC loader for API schema change on evidenceItems status type (from EvidenceStatus to EvidenceStatusFilter).

v6.3.0

New Features

• Add all solid tumors disease ontology file
• civic: Parse double-colon fusion gene notation

BugFixes

• Fix critical audit vulnerabilities by removing commitizen package
• civic: Refactor loader for new CIViC Api v2
• ensembl: Request json file when querying Ensembl Api for linking features to parent
• hgnc: Fix connexion reference when adding alias_symbol records to GraphKB

Improvements

• entrez: Add test with mocking for entrez gene
• ensembl: Add test with mocking for fetchAndLoadById