Process completed with exit code 1.

Process completed with exit code 1.

Process completed with exit code 1.

Process completed with exit code 1.

Process completed with exit code 1.

failed to run `@example` block in src/tutorial.md:252-255 ```@example tutorial samples = bat_sample(posterior, MCMCSampling(mcalg = MetropolisHastings(), nsteps = 10^5, nchains = 4)).result nothing # hide ``` exception = Failed to generate 4 viable MCMC chains Stacktrace: [1] error(s::String) @ Base ./error.jl:35 [2] mcmc_init!(algorithm::MetropolisHastings{Distributions.TDist{Float64}, RepetitionWeighting{Int64}, AdaptiveMHTuning}, m::PosteriorMeasure{DensityInterface.LogFuncDensity{FunctionChains.FunctionChain{Tuple{BAT.DistributionTransform{ValueShapes.NamedTupleDist{(:a, :mu, :sigma), Tuple{Distributions.Product{Distributions.Continuous, Distributions.Weibull{Float64}, Vector{Distributions.Weibull{Float64}}}, Distributions.Product{Distributions.Continuous, Distributions.Uniform{Float64}, Vector{Distributions.Uniform{Float64}}}, Distributions.Weibull{Float64}}, Tuple{ValueShapes.ValueAccessor{ValueShapes.ArrayShape{Real, 1}}, ValueShapes.ValueAccessor{ValueShapes.ArrayShape{Real, 1}}, ValueShapes.ValueAccessor{ValueShapes.ScalarShape{Real}}}, NamedTuple}, BAT.StandardMvNormal{Float64}}, Main.__atexample__named__tutorial.var"#3#4"{StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}, Vector{Int64}, typeof(Main.__atexample__named__tutorial.fit_function)}}}}, BAT.BATDistMeasure{BAT.StandardMvNormal{Float64}}}, nchains::Int64, init_alg::MCMCChainPoolInit, tuning_alg::AdaptiveMHTuning, nonzero_weights::Bool, callback::Function, context::BATContext{Float64, Random123.Philox4x{UInt64, 10}, HeterogeneousComputing.CPUnit, BAT._NoADSelected}) @ BAT ~/work/BAT.jl/BAT.jl/src/samplers/mcmc/chain_pool_init.jl:194 [3] bat_sample_impl(m::PosteriorMeasure{DensityInterface.LogFuncDensity{Main.__atexample__named__tutorial.var"#3#4"{StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}, Vector{Int64}, typeof(Main.__atexample__named__tutorial.fit_function)}}, BAT.BATDistMeasure{ValueShapes.NamedTupleDist{(:a, :mu, :sigma), Tuple{Distributions.Product{Distributions.Continuous, Distributions.Weibull{Float64}, Vector{Distributions.Weibull{Float64}}}, Distributions.Product{Distributions.Continuous, Distributions.Uniform{Float64}, Vector{Distributions.Uniform{Float64}}}, Distributions.Weibull{Float64}}, Tuple{ValueShapes.ValueAccessor{ValueShapes.ArrayShape{Real, 1}}, ValueShapes.ValueAccessor{ValueShapes.ArrayShape{Real, 1}}, ValueShapes.ValueAccessor{ValueShapes.ScalarShape{Real}}}, NamedTuple}}}, algorithm::MCMCSampling{MetropolisHastings{Distributions.TDist{Float64}, RepetitionWeighting{Int64}, AdaptiveMHTuning}, PriorToGaussian, MCMCChainPoolInit, MCMCMultiCycleBurnin, BrooksGelmanConvergence, typeof(BAT.nop_func)}, context::BATContext{Float64, Random123.Philox4x{UInt64, 10}, HeterogeneousComputing.CPUnit, BAT._NoADSelected}) @ BAT ~/work/BAT.jl/BAT.jl/src/samplers/mcmc/mcmc_sample.jl:46 [4] bat_sample(target::PosteriorMeasure{DensityInterface.LogFuncDensity{Main.__atexample__named__tutorial.var"#3#4"{StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}, StepRangeLen{Float64, Base.TwicePrecision{Float64}, Base.TwicePrecision{Float64}, Int64}, Vector{Int64}, typeof(Main.__atexample__named__tutorial.fit_function)}}, BAT.BATDistMeasure{ValueShapes.NamedTupleDist{(:a, :mu, :sigma), Tuple{Distributions.Product{Distributions.Continuous, Distributions.Weibull{Float64}, Vector{Distributions.Weibull{Float64}}}, Distributions.Product{Distributions.Continuous, Distributions.Uniform{Float64}, Vector{Distributions.Uniform{Float64}}}, Distributions.Weibull{Float64}}, Tuple{ValueShapes.ValueAccessor{ValueShapes.ArrayShape{Real, 1}}, ValueShapes.ValueAccessor{ValueShapes.ArrayShape{Real, 1}}, ValueShapes.ValueAccessor{ValueShapes.ScalarShape{Real}}}, NamedTuple}}}, algorithm::MCMCSampling{MetropolisHastings{Distri

failed to run `@example` block in src/tutorial.md:259-264 ```@example tutorial println("Truth: $true_par_values") println("Mode: $(mode(samples))") println("Mean: $(mean(samples))") println("Stddev: $(std(samples))") ``` exception = UndefVarError: `samples` not defined Stacktrace: [1] top-level scope @ tutorial.md:261 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:752

failed to run `@example` block in src/tutorial.md:269-271 ```@example tutorial unshaped_samples, f_flatten = bat_transform(Vector, samples) ``` exception = UndefVarError: `samples` not defined Stacktrace: [1] top-level scope @ tutorial.md:270 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:752

failed to run `@example` block in src/tutorial.md:278-281 ```@example tutorial par_cov = cov(unshaped_samples) println("Covariance: $par_cov") ``` exception = UndefVarError: `unshaped_samples` not defined Stacktrace: [1] top-level scope @ tutorial.md:279 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:752

failed to run `@example` block in src/tutorial.md:285-287 ```@example tutorial bat_report(samples) ``` exception = UndefVarError: `samples` not defined Stacktrace: [1] top-level scope @ tutorial.md:286 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:752

failed to run `@example` block in src/tutorial.md:296-304 ```@example tutorial plot( samples, :(mu[1]), mean = true, std = true, globalmode = true, marginalmode = true, nbins = 50, title = "Marginalized Distribution for mu[1]" ) savefig("tutorial-single-par.pdf") savefig("tutorial-single-par.svg"); nothing # hide ``` exception = UndefVarError: `samples` not defined Stacktrace: [1] top-level scope @ tutorial.md:297 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:752

failed to run `@example` block in src/tutorial.md:312-321 ```@example tutorial plot( samples, (:(mu[1]), :sigma), mean = true, std = true, globalmode = true, marginalmode = true, nbins = 50, title = "Marginalized Distribution for mu[1] and sigma" ) plot!(BAT.MCMCBasicStats(samples), (3, 5)) savefig("tutorial-param-pair.png") savefig("tutorial-param-pair.svg"); nothing # hide ``` exception = UndefVarError: `samples` not defined Stacktrace: [1] top-level scope @ tutorial.md:313 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:752

failed to run `@example` block in src/tutorial.md:328-336 ```@example tutorial plot( samples, mean = false, std = false, globalmode = true, marginalmode = false, nbins = 50 ) savefig("tutorial-all-params.png") savefig("tutorial-all-params.svg"); nothing # hide ``` exception = UndefVarError: `samples` not defined Stacktrace: [1] top-level scope @ tutorial.md:329 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:752

failed to run `@example` block in src/tutorial.md:348-352 ```@example tutorial using TypedTables tbl = Table(samples) ``` exception = UndefVarError: `samples` not defined Stacktrace: [1] top-level scope @ tutorial.md:351 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:752

failed to run `@example` block in src/tutorial.md:362-364 ```@example tutorial samples_mode = mode(samples) ``` exception = UndefVarError: `samples` not defined Stacktrace: [1] top-level scope @ tutorial.md:363 [2] eval @ ./boot.jl:385 [inlined] [3] #58 @ ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#58#60"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#57#59"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#4#7"{DataType, Documenter.var"#57#59"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:161 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#57#59"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer) @ IOCapture ~/.julia/packages/IOCapture/Rzdxd/src/IOCapture.jl:158 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/CJeWX/src/expander_pipeline.jl:752

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: julia-actions/setup-julia@v1, actions/cache@4d4ae6ae148a43d0fd1eda1800170683e9882738, pyTooling/Actions/with-post-step@adef08d3bdef092282614f3b683897cefae82ee3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: julia-actions/setup-julia@v1, actions/cache@4d4ae6ae148a43d0fd1eda1800170683e9882738, pyTooling/Actions/with-post-step@adef08d3bdef092282614f3b683897cefae82ee3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: julia-actions/setup-julia@v1, actions/cache@4d4ae6ae148a43d0fd1eda1800170683e9882738, pyTooling/Actions/with-post-step@adef08d3bdef092282614f3b683897cefae82ee3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: julia-actions/setup-julia@v1, actions/cache@4d4ae6ae148a43d0fd1eda1800170683e9882738, pyTooling/Actions/with-post-step@adef08d3bdef092282614f3b683897cefae82ee3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.

Node.js 16 actions are deprecated. Please update the following actions to use Node.js 20: julia-actions/setup-julia@v1, actions/cache@4d4ae6ae148a43d0fd1eda1800170683e9882738, pyTooling/Actions/with-post-step@adef08d3bdef092282614f3b683897cefae82ee3. For more information see: https://github.blog/changelog/2023-09-22-github-actions-transitioning-from-node-16-to-node-20/.