Changelog
Report script:
- Increase backwards compatibility by handling missing fields in json report. Missing fields populated with "-" in report pdf.
- Added optional disclaimer as a footer in the report
El_gato:
- Adjust minimum mapped reads to 10. If fewer than 10 reads are mapped el_gato aborts and reports that the ST cannot be determined.
- Fixed JSON report not generating when run is aborted.
- Added command line control over minimap k-mer size setting using
-k,--kmer-size.