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A convinent tool to visualize AlphaFold 3 prediction results with PyMOL and matplotlib

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Zuricho/AlphaFold3_Result_Visualize

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AlphaFold3 Result Visualize

Introduction

A convinent tool to visualize AlphaFold 3 prediction results with PyMOL and matplotlib

What can this do:

  • Get a .pml script to help visualize including: (Work in progress)
    • pLDDT
    • Chain
    • Molecule type
    • low PAE contacts
  • Get figures about: (Finished)
    • PAE

Usage

python vis_pae.py <alphafold_prediction_directory>

Example

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A convinent tool to visualize AlphaFold 3 prediction results with PyMOL and matplotlib

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