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Change the download method for KEGG data #290

Merged
merged 2 commits into from
Sep 8, 2020
Merged

Change the download method for KEGG data #290

merged 2 commits into from
Sep 8, 2020

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huerqiang
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由于downloader::download在下载KEGG信息时常常下载不完全,而又不会给出下载的文件是否完整的提示信息,这导致了用户使用enrichKEGG等与KEGG相关的富集分析函数时出现运行多次但每次结果不一致的情况。我改用download.file(url, destfile = f, quiet = FALSE, method="libcurl")来下载,经过测试,可以下载到完整数据。
另外,enrichGO等函数的参数pvalueCutoff实际上控制的是矫正后的P值,因此我在函数的文档中加了个“adjusted”。

@GuangchuangYu GuangchuangYu merged commit 604b2d5 into YuLab-SMU:master Sep 8, 2020
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