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Inversion
Jacob Munro edited this page Jan 18, 2017
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A) Green and purple arrows show how reads derived from the variant genome are aligned to the reference genome. Red Stars indicate breakpoints in the variant genome and sites of split/hard-clipped reads in the reference genome alignment. Note that the paired reads spanning the breakpoints align to the same strand of the reference.
B) Characteristics of an inversion are indicated: (1) hard-clipped reads, and (2) paired reads mapping to same strand at the breakpoints.