Check miniconda/lib for OpenMP #1454
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| name: Tests | |
| on: | |
| push: | |
| branches: main | |
| pull_request: | |
| branches: main | |
| jobs: | |
| minimum-version-testing: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ['3.7'] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Fix Broken Python 3.7.17 (no _bz2 module) | |
| run: rm -rf $RUNNER_TOOL_CACHE/Python/3.7.17 | |
| shell: bash | |
| - name: Set Up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Display Python Version | |
| run: python -c "import sys; print(sys.version)" | |
| shell: bash | |
| - name: Generate Minimum Requirements File | |
| run: sed 's/>/=/g' requirements.txt | sed 's/$/\.*/g' > requirements.min.txt | |
| shell: bash | |
| - name: Install Minimum Requirements | |
| run: python -m pip install --upgrade -r requirements.min.txt | |
| shell: bash | |
| - name: Install STUMPY And Other Dependencies | |
| run: python -m pip install --editable .[ci] | |
| shell: bash | |
| - name: Run Black | |
| run: black --check --diff ./ | |
| shell: bash | |
| - name: Run Flake8 | |
| run: flake8 ./ | |
| shell: bash | |
| - name: Link OpenMP | |
| run: | | |
| if [ "$RUNNER_OS" == "macOS" ]; then | |
| brew link --force libomp | |
| fi | |
| shell: bash | |
| - name: Show Full Numba Environment | |
| run: python -m numba -s | |
| shell: bash | |
| - name: Run Unit Tests | |
| run: ./test.sh unit | |
| shell: bash | |
| unit-testing: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| # python-version: ['3.7', '3.8', '3.9', '3.10', '3.11'] | |
| python-version: ['3.9'] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Fix Broken Python 3.7.17 (no _bz2 module) | |
| run: rm -rf $RUNNER_TOOL_CACHE/Python/3.7.17 | |
| shell: bash | |
| - name: Set Up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Display Python Version | |
| run: python -c "import sys; print(sys.version)" | |
| shell: bash | |
| - name: Install STUMPY And Other Dependencies | |
| run: python -m pip install --editable .[ci] | |
| shell: bash | |
| - name: Run Black | |
| run: black --check --diff ./ | |
| shell: bash | |
| - name: Run Flake8 | |
| run: flake8 ./ | |
| shell: bash | |
| - name: Link OpenMP | |
| run: | | |
| if [ "$RUNNER_OS" == "macOS" ]; then | |
| echo "Linking OpenMP into /usr/local/lib" | |
| brew link --force libomp | |
| echo "Checking /usr/local/lib for OpenMP" | |
| ls /usr/local/lib | grep lib*omp*.dylib | |
| echo "Checking miniconda/lib for OpenMP" | |
| echo "$(python -c 'import site; print(site.getsitepackages()[0])')" | grep -o '^.*lib' | ls lib*omp*dylib | |
| # echo "Changing @rpath for the omppool.cpython-x-darwin.so shared object to look in /usr/local/lib" | |
| # ls "$(python -c 'import site; print(site.getsitepackages()[0])')"/numba/np/ufunc/omppool.*.so | xargs install_name_tool -change @rpath/libomp.dylib /usr/local/lib/libomp.dylib | |
| # ls "$(python -c 'import site; print(site.getsitepackages()[0])')"/numba/np/ufunc/omppool.*.so | xargs install_name_tool -change @rpath/libiomp5.dylib /usr/local/lib/libiomp5.dylib | |
| echo "Checking Numba OpenMP Access" | |
| python -c "from numba.np.ufunc import omppool" | |
| fi | |
| shell: bash | |
| - name: Show Full Numba Environment | |
| run: python -m numba -s | |
| shell: bash | |
| - name: Run Unit Tests | |
| run: ./test.sh unit | |
| shell: bash | |
| # coverage-testing: | |
| # runs-on: ${{ matrix.os }} | |
| # strategy: | |
| # matrix: | |
| # os: [ubuntu-latest, macos-latest, windows-latest] | |
| # python-version: ['3.7', '3.8', '3.9', '3.10', '3.11'] | |
| # steps: | |
| # - uses: actions/checkout@v3 | |
| # - name: Fix Broken Python 3.7.17 (no _bz2 module) | |
| # run: rm -rf $RUNNER_TOOL_CACHE/Python/3.7.17 | |
| # shell: bash | |
| # - name: Set Up Python | |
| # uses: actions/setup-python@v4 | |
| # with: | |
| # python-version: ${{ matrix.python-version }} | |
| # - name: Display Python Version | |
| # run: python -c "import sys; print(sys.version)" | |
| # shell: bash | |
| # - name: Install STUMPY And Other Dependencies | |
| # run: python -m pip install --editable .[ci] | |
| # shell: bash | |
| # - name: Run Black | |
| # run: black --check --diff ./ | |
| # shell: bash | |
| # - name: Run Flake8 | |
| # run: flake8 ./ | |
| # shell: bash | |
| # - name: Link OpenMP | |
| # run: | | |
| # if [ "$RUNNER_OS" == "macOS" ]; then | |
| # brew link --force libomp | |
| # fi | |
| # shell: bash | |
| # - name: Show Full Numba Environment | |
| # run: python -m numba -s | |
| # shell: bash | |
| # - name: Run Coverage Tests | |
| # run: ./test.sh coverage | |
| # shell: bash | |
| # - name: Check Coverage Report | |
| # run: coverage report -m --fail-under=100 --skip-covered --omit=setup.py,docstring.py,stumpy/cache.py | |
| # shell: bash | |
| # - name: Upload Coverage Tests Results | |
| # uses: codecov/codecov-action@v3 |