Fix #998: Speed up stumpi and aampi #1831
Workflow file for this run
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| name: Tests | |
| on: | |
| push: | |
| branches: main | |
| pull_request: | |
| branches: main | |
| jobs: | |
| minimum-version-testing: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ['3.8'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set Up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Display Python Version | |
| run: python -c "import sys; print(sys.version)" | |
| shell: bash | |
| - name: Upgrade Pip | |
| run: python -m pip install --upgrade pip | |
| shell: bash | |
| - name: Generate Minimum Requirements File | |
| run: sed 's/>/=/g' requirements.txt | sed 's/$/\.*/g' > requirements.min.txt | |
| shell: bash | |
| - name: Install Minimum Requirements | |
| run: python -m pip install --upgrade -r requirements.min.txt | |
| shell: bash | |
| - name: Install STUMPY And Other Dependencies | |
| run: python -m pip install --editable .[ci] | |
| shell: bash | |
| - name: Run Black | |
| run: black --check --diff ./ | |
| shell: bash | |
| - name: Run Flake8 | |
| run: flake8 ./ | |
| shell: bash | |
| - name: Install and Link OpenMP | |
| run: | | |
| if [ "$RUNNER_OS" == "macOS" ]; then | |
| echo "Installing OpenMP" | |
| brew install libomp | |
| echo "Linking OpenMP" | |
| brew link --force libomp | |
| echo "Find OpenMP Linking Location" | |
| libfile=`brew list libomp --verbose | grep libomp.dylib` | |
| echo $libfile | |
| echo "Changing @rpath for the omppool.cpython-x-darwin.so shared object to look in $libfile" | |
| ls "$(python -c 'import site; print(site.getsitepackages()[0])')"/numba/np/ufunc/omppool.*.so | xargs install_name_tool -change @rpath/libomp.dylib $libfile | |
| fi | |
| shell: bash | |
| - name: Show Full Numba Environment | |
| run: python -m numba -s | |
| shell: bash | |
| - name: Run Unit Tests | |
| run: ./test.sh unit | |
| shell: bash | |
| unit-testing: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ['3.8', '3.9', '3.10', '3.11', '3.12'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set Up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Display Python Version | |
| run: python -c "import sys; print(sys.version)" | |
| shell: bash | |
| - name: Upgrade Pip | |
| run: python -m pip install --upgrade pip | |
| shell: bash | |
| - name: Install STUMPY And Other Dependencies | |
| run: python -m pip install --editable .[ci] | |
| shell: bash | |
| - name: Run Black | |
| run: black --check --diff ./ | |
| shell: bash | |
| - name: Run Flake8 | |
| run: flake8 ./ | |
| shell: bash | |
| - name: Install OpenMP | |
| run: | | |
| if [ "$RUNNER_OS" == "macOS" ]; then | |
| echo "Installing OpenMP" | |
| brew install libomp | |
| echo "Linking OpenMP" | |
| brew link --force libomp | |
| echo "Find OpenMP Linking Location" | |
| libfile=`brew list libomp --verbose | grep libomp.dylib` | |
| echo $libfile | |
| echo "Changing @rpath for the omppool.cpython-x-darwin.so shared object to look in $libfile" | |
| ls "$(python -c 'import site; print(site.getsitepackages()[0])')"/numba/np/ufunc/omppool.*.so | xargs install_name_tool -change @rpath/libomp.dylib $libfile | |
| fi | |
| shell: bash | |
| - name: Show Full Numba Environment | |
| run: python -m numba -s | |
| shell: bash | |
| - name: Run Unit Tests | |
| run: ./test.sh unit | |
| shell: bash | |
| coverage-testing: | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ['3.8', '3.9', '3.10', '3.11', '3.12'] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set Up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Display Python Version | |
| run: python -c "import sys; print(sys.version)" | |
| shell: bash | |
| - name: Upgrade Pip | |
| run: python -m pip install --upgrade pip | |
| shell: bash | |
| - name: Install STUMPY And Other Dependencies | |
| run: python -m pip install --editable .[ci] | |
| shell: bash | |
| - name: Run Black | |
| run: black --check --diff ./ | |
| shell: bash | |
| - name: Run Flake8 | |
| run: flake8 ./ | |
| shell: bash | |
| - name: Link OpenMP | |
| run: | | |
| if [ "$RUNNER_OS" == "macOS" ]; then | |
| echo "Installing OpenMP" | |
| brew install libomp | |
| echo "Linking OpenMP" | |
| brew link --force libomp | |
| echo "Find OpenMP Linking Location" | |
| libfile=`brew list libomp --verbose | grep libomp.dylib` | |
| echo $libfile | |
| echo "Changing @rpath for the omppool.cpython-x-darwin.so shared object to look in $libfile" | |
| ls "$(python -c 'import site; print(site.getsitepackages()[0])')"/numba/np/ufunc/omppool.*.so | xargs install_name_tool -change @rpath/libomp.dylib $libfile | |
| fi | |
| shell: bash | |
| - name: Show Full Numba Environment | |
| run: python -m numba -s | |
| shell: bash | |
| - name: Run Coverage Tests | |
| run: ./test.sh coverage | |
| shell: bash | |
| - name: Generate Coverage Report | |
| run: ./test.sh report coverage.stumpy.xml | |
| shell: bash | |
| - name: Upload Coverage Tests Results | |
| uses: codecov/codecov-action@v4 | |
| with: | |
| file: ./coverage.stumpy.xml | |
| verbose: true | |
| token: ${{ secrets.CODECOV_TOKEN }} |