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Follow Strelka BP and use Manta small indels candidates as input #556
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I think I can add this option for Germline as well, so do not merge yet. |
So bad idea to try to implement for germline, I should have read further.
At least I read it before starting to do some work on it. |
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Looks OK
Eventually we could check on real data whether it improves indel calls. |
Of course, that why for the moment it's not working by default, but I hope to definitively use this functionality. |
Follow Strelka BP and use Manta small indels candidates as input
new PR to replace #467
This is deactivated by default.
So it should be safe to merge if we want to try this new feature