interartic-v0.4.4

Commits

• fa0bce5: update rapid kit warning (James Ferguson)
• c6f156c: bump version to 0.4.4 (Hasindu Gamaarachchi)

interartic-v0.4.3

Commits

• 9badb6b: handle gzip fastqs (Psy-Fer)
• a3efdbf: Update README.md (Hasindu Gamaarachchi)
• 1f6dfbf: Added warning for rapid kit (Psy-Fer)
• 4f60b62: version bump 0.4.3 (Psy-Fer)
• ec3de66: updated version in README (Hasindu Gamaarachchi)
• 072f8e6: updated the version in varioud other places (Hasindu Gamaarachchi)
• 6503b3a: undo bad change (Psy-Fer)

interartic-v0.4.2

• improve documentation
• Fix for *fastq.gz guppyplex files
• GitHub actions for releases now

interartic-v0.4.1

• integrate fast5 vbz plugin
• bug fix to QC metrics

interartic-v0.4

This release of interARTIC brings content updates and bug fixes.

Major Changes:

• improved error reporting
• added more tooltips
• QC metrics added to output page
• QC metric download
• Fasta file download buttons moved
• download fasta files as .tar and combined fasta
• enabled guppy demultiplexed samples to analysed
• improved folder structure traversal
• fixed matplotlib backend to use "Agg"
• Added version info to all pages
• Added detailed version checks to about page
• Change abort button to success button on completion
• fix output button spam bug
• utf-8 compatibility added, other than space
• Buttons for next and previous samples added
• added how to update to about page
• added offline docs linked in InterARTIC
• custom scheme descriptions added to docs
• artic V4 primers added
• variant depth calculations improved
• made compatible with more systems (macOS, Linux, Windows, ARM, M1)
• Docker containerisation

macOS and aarch64 beta-release

macOS and aarch64 beta-release for initial testing.

interartic-v0.3

• new features / enhancements

  • download button for consensus fasta file
  • more tooltips
  • cleaning up temporary files

• bug fixes

  • custom primers work now
  • after a job failure, the user is forced to do an abort and restart from the beginning
  • better error checking to prevent user from giving an input dataset with a wrong directory structure
  • meaningful error when the sequencing summary file is not present

interartic-v0.2-beta

updated the usage page

interartic-v0.1-alpha

Kill the children