Releases: PacificBiosciences/pbfusion
Releases · PacificBiosciences/pbfusion
Version 0.4.1
- Bug fix: consistent ordering between gene ids and gene names when dealing with ambiguity.
- Bug fix: rely on breakpoint ordering in visualization script.
- Improvement: gene names are assigned automatically in visualization script.
- Improvement: visualization script can now take SAM files as input.
- Improvement: visualization script can now take a breakpoint number (these aren't always unique, so it's best to still give a single entry).
Version 0.4.0
- Improvement: Improved ambiguous gene resolution.
- Improvement: read lzma-compressed annotations in text and binary format.
- Improvement: Support multiple bam/fofn (File-Of-FileNames) inputs.
- Improvement: reduced false-positive fusions.
- Improvement: Additional metadata for putative fusion candidates.
- Improvement: Updated cached binary format. WARNING: this is a breaking change. Old binary annotation files will need to be re-generated.
- Alteration: reduced chaining distance for clustering breakpoints.
- Alteration: emit sense-antisense events by default.
- Improvement: Maintain read ordering in reporting fusions.
- Bug fix: Update reported breakpoints so that the interval described is the last-in-read and the second is first-soft-clipped.
- Improvement: Add gene names to annotation in order they occur in reads.
- Improvement: Report all breakpoint coordinates for reads in a breakpoint cluster, add as a new tag.
- Improvement: Update read-through annotation such that we define it based on the breakpoint distance instead of the distance between genes.
Version 0.3.1
Bug fix: resolving query position sorting.
Version 0.3.0
- Bug fix: resolving strandness breakpoint errors.
- Bug fix: GTF parsing of overlapping annotations.
- Bug fix: annoting gtf records without parent gene entries.
Version 0.2.2
- Update CLI for single binary
- Add more filtering options
pbfusion v0.1.0
First release of pbfusion 🥇